Nalu
Nalu: a generalized unstructured massively parallel low Mach flow code designed to support a variety of energy applications of interest (most notably Wind ECP) built on the Sierra Toolkit and Trilinos solver Tpetra/Epetra stack. The open source BSD, clause 3 license model has been chosen for the code base. See LICENSE for more information. http://NaluCFD.org
Public Member Functions | Public Attributes | List of all members
sierra::nalu::SpecificDissipationRateEquationSystem Class Reference

#include <SpecificDissipationRateEquationSystem.h>

Inheritance diagram for sierra::nalu::SpecificDissipationRateEquationSystem:
sierra::nalu::EquationSystem

Public Member Functions

 SpecificDissipationRateEquationSystem (EquationSystems &equationSystems)
 
virtual ~SpecificDissipationRateEquationSystem ()
 
virtual void register_nodal_fields (stk::mesh::Part *part)
 
void register_interior_algorithm (stk::mesh::Part *part)
 
void register_inflow_bc (stk::mesh::Part *part, const stk::topology &theTopo, const InflowBoundaryConditionData &inflowBCData)
 
void register_open_bc (stk::mesh::Part *part, const stk::topology &theTopo, const OpenBoundaryConditionData &openBCData)
 
void register_wall_bc (stk::mesh::Part *part, const stk::topology &theTopo, const WallBoundaryConditionData &wallBCData)
 
virtual void register_symmetry_bc (stk::mesh::Part *part, const stk::topology &theTopo, const SymmetryBoundaryConditionData &symmetryBCData)
 
virtual void register_non_conformal_bc (stk::mesh::Part *part, const stk::topology &theTopo)
 
virtual void register_overset_bc ()
 
void initialize ()
 
void reinitialize_linear_system ()
 
void predict_state ()
 
void compute_wall_model_parameters ()
 
void assemble_nodal_gradient ()
 
void compute_effective_diff_flux_coeff ()
 
- Public Member Functions inherited from sierra::nalu::EquationSystem
 EquationSystem (EquationSystems &eqSystems, const std::string name="no_name", const std::string eqnTypeName="no_eqn_type_name")
 
virtual ~EquationSystem ()
 
void set_nodal_gradient (const std::string &dofName)
 
virtual void initial_work ()
 
virtual void populate_derived_quantities ()
 
virtual void register_edge_fields (stk::mesh::Part *part)
 
virtual void register_element_fields (stk::mesh::Part *part, const stk::topology &theTopo)
 
virtual void solve_and_update ()
 Assemble the LHS and RHS and perform linear solve for prescribed number of iterations. More...
 
virtual void pre_iter_work ()
 Perform setup tasks before entering the solve and update step. More...
 
virtual void post_iter_work ()
 Perform setup tasks after he solve and update step. More...
 
virtual void post_iter_work_dep ()
 Deprecated post iteration work logic. More...
 
virtual void assemble_and_solve (stk::mesh::FieldBase *deltaSolution)
 
virtual void provide_output ()
 
virtual void pre_timestep_work ()
 
virtual void post_adapt_work ()
 
virtual void dump_eq_time ()
 
virtual double provide_scaled_norm ()
 
virtual double provide_norm ()
 
virtual double provide_norm_increment ()
 
virtual bool system_is_converged ()
 
virtual void register_periodic_bc (stk::mesh::Part *partMaster, stk::mesh::Part *partSlave, const stk::topology &theTopoMaster, const stk::topology &theTopoSlave, const PeriodicBoundaryConditionData &periodicBCData)
 
virtual void create_constraint_algorithm (stk::mesh::FieldBase *theField)
 
virtual void register_surface_pp_algorithm (const PostProcessingData &theData, stk::mesh::PartVector &partVector)
 
virtual void register_initial_condition_fcn (stk::mesh::Part *part, const std::map< std::string, std::string > &theNames, const std::map< std::string, std::vector< double > > &theParams)
 
virtual void evaluate_properties ()
 
PecletFunction * create_peclet_function (const std::string dofName)
 
virtual void load (const YAML::Node &node)
 
Simulation * root ()
 
EquationSystems * parent ()
 
void report_invalid_supp_alg_names ()
 
void report_built_supp_alg_names ()
 
bool supp_alg_is_requested (std::string name)
 
bool supp_alg_is_requested (std::vector< std::string >)
 
bool nodal_src_is_requested ()
 
void update_iteration_statistics (const int &iters)
 
bool bc_data_specified (const UserData &, std::string &name)
 
UserDataType get_bc_data_type (const UserData &, std::string &name)
 
std::string get_bc_function_name (const UserData &, std::string &name)
 
std::vector< double > get_bc_function_params (const UserData &, std::string &name)
 
std::vector< std::string > get_bc_function_string_params (const UserData &, std::string &name)
 
virtual void post_converged_work ()
 

Public Attributes

const bool managePNG_
 
ScalarFieldType * sdr_
 
VectorFieldType * dwdx_
 
ScalarFieldType * wTmp_
 
ScalarFieldType * visc_
 
ScalarFieldType * tvisc_
 
ScalarFieldType * evisc_
 
ScalarFieldType * sdrWallBc_
 
ScalarFieldType * assembledWallSdr_
 
ScalarFieldType * assembledWallArea_
 
AssembleNodalGradAlgorithmDriver * assembleNodalGradAlgDriver_
 
AlgorithmDriver * diffFluxCoeffAlgDriver_
 
std::vector< Algorithm * > wallModelAlg_
 
- Public Attributes inherited from sierra::nalu::EquationSystem
EquationSystems & equationSystems_
 
Realm & realm_
 
std::string name_
 
std::string userSuppliedName_
 
const std::string eqnTypeName_
 
int maxIterations_
 
double convergenceTolerance_
 
SolverAlgorithmDriver * solverAlgDriver_
 
double timerAssemble_
 
double timerLoadComplete_
 
double timerSolve_
 
double timerMisc_
 
double timerInit_
 
double timerPrecond_
 
double avgLinearIterations_
 
double maxLinearIterations_
 
double minLinearIterations_
 
int nonLinearIterationCount_
 
bool reportLinearIterations_
 
bool firstTimeStepSolve_
 
bool edgeNodalGradient_
 
std::vector< AuxFunctionAlgorithm * > bcDataAlg_
 
std::vector< Algorithm * > bcDataMapAlg_
 
std::vector< Algorithm * > copyStateAlg_
 
LinearSystem * linsys_
 
size_t num_graph_entries_
 
std::vector< Algorithm * > propertyAlg_
 
std::vector< AlgorithmDriver * > preIterAlgDriver_
 List of tasks to be performed before each solve_and_update of this equation system. More...
 
std::vector< AlgorithmDriver * > postIterAlgDriver_
 List of tasks to be performed after each solve_and_update of this equation system. More...
 

Constructor & Destructor Documentation

sierra::nalu::SpecificDissipationRateEquationSystem::SpecificDissipationRateEquationSystem ( EquationSystems &  equationSystems)

References sierra::nalu::LinearSystem::create(), sierra::nalu::LinearSolvers::create_solver(), sierra::nalu::EquationSystem::edgeNodalGradient_, sierra::nalu::EQ_SPEC_DISS_RATE, sierra::nalu::Realm::equationSystems_, sierra::nalu::EquationSystems::get_solver_block_name(), sierra::nalu::Simulation::linearSolvers_, sierra::nalu::EquationSystem::linsys_, managePNG_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::Realm::push_equation_to_systems(), sierra::nalu::EquationSystem::realm_, sierra::nalu::Realm::root(), sierra::nalu::NaluEnv::self(), and sierra::nalu::EquationSystem::set_nodal_gradient().

sierra::nalu::SpecificDissipationRateEquationSystem::~SpecificDissipationRateEquationSystem ( )
virtual

References assembleNodalGradAlgDriver_, diffFluxCoeffAlgDriver_, and wallModelAlg_.

Member Function Documentation

void sierra::nalu::SpecificDissipationRateEquationSystem::assemble_nodal_gradient ( )

References assembleNodalGradAlgDriver_, sierra::nalu::AlgorithmDriver::execute(), sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::self(), and sierra::nalu::EquationSystem::timerMisc_.

Referenced by sierra::nalu::ShearStressTransportEquationSystem::solve_and_update().

void sierra::nalu::SpecificDissipationRateEquationSystem::compute_effective_diff_flux_coeff ( )

References diffFluxCoeffAlgDriver_, sierra::nalu::AlgorithmDriver::execute(), sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::self(), and sierra::nalu::EquationSystem::timerMisc_.

Referenced by sierra::nalu::ShearStressTransportEquationSystem::solve_and_update().

void sierra::nalu::SpecificDissipationRateEquationSystem::compute_wall_model_parameters ( )

References assembledWallArea_, assembledWallSdr_, sierra::nalu::Realm::bulk_data(), sierra::nalu::Realm::get_buckets(), sierra::nalu::Realm::hasPeriodic_, sierra::nalu::Realm::meta_data(), sierra::nalu::Realm::periodic_field_update(), sierra::nalu::EquationSystem::realm_, sdr_, sdrWallBc_, and wallModelAlg_.

Referenced by sierra::nalu::ShearStressTransportEquationSystem::post_adapt_work(), and sierra::nalu::ShearStressTransportEquationSystem::solve_and_update().

void sierra::nalu::SpecificDissipationRateEquationSystem::initialize ( )
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::LinearSystem::finalizeLinearSystem(), sierra::nalu::SolverAlgorithmDriver::initialize_connectivity(), sierra::nalu::EquationSystem::linsys_, and sierra::nalu::EquationSystem::solverAlgDriver_.

void sierra::nalu::SpecificDissipationRateEquationSystem::predict_state ( )
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::Realm::bulk_data(), sierra::nalu::field_copy(), sierra::nalu::Realm::get_activate_aura(), sierra::nalu::Realm::meta_data(), sierra::nalu::EquationSystem::realm_, and sdr_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_inflow_bc ( stk::mesh::Part *  part,
const stk::topology &  theTopo,
const InflowBoundaryConditionData &  inflowBCData 
)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::AlgorithmDriver::algMap_, assembleNodalGradAlgDriver_, sierra::nalu::EquationSystem::bcDataAlg_, sierra::nalu::EquationSystem::bcDataMapAlg_, dwdx_, sierra::nalu::EquationSystem::edgeNodalGradient_, sierra::nalu::UserData::externalData_, sierra::nalu::INFLOW, sierra::nalu::Realm::initCondAlg_, sierra::nalu::Realm::meta_data(), sierra::nalu::EquationSystem::realm_, sdr_, sierra::nalu::InflowUserData::sdr_, sierra::nalu::EquationSystem::solverAlgDriver_, sierra::nalu::SolverAlgorithmDriver::solverDirichAlgMap_, sierra::nalu::SpecDissRate::specDissRate_, and sierra::nalu::InflowBoundaryConditionData::userData_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_interior_algorithm ( stk::mesh::Part *  part)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::AlgorithmDriver::algMap_, assembleNodalGradAlgDriver_, diffFluxCoeffAlgDriver_, dwdx_, sierra::nalu::EquationSystem::edgeNodalGradient_, sierra::nalu::SolutionOptions::elemSrcTermsMap_, evisc_, sierra::nalu::Realm::get_turb_model_constant(), sierra::nalu::Realm::get_turb_schmidt(), sierra::nalu::INTERIOR, sierra::nalu::MASS, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::Realm::number_of_states(), sierra::nalu::EquationSystem::realm_, sierra::nalu::Realm::realmUsesEdges_, sdr_, sierra::nalu::NaluEnv::self(), sierra::nalu::Realm::solutionOptions_, sierra::nalu::EquationSystem::solverAlgDriver_, sierra::nalu::SolverAlgorithmDriver::solverAlgMap_, sierra::nalu::SolutionOptions::srcTermsMap_, sierra::nalu::EquationSystem::supp_alg_is_requested(), sierra::nalu::Algorithm::supplementalAlg_, sierra::nalu::TM_sigmaWOne, sierra::nalu::TM_sigmaWTwo, tvisc_, and visc_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_nodal_fields ( stk::mesh::Part *  part)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::Realm::augment_restart_variable_list(), sierra::nalu::EquationSystem::copyStateAlg_, dwdx_, evisc_, sierra::nalu::Realm::meta_data(), sierra::nalu::Realm::number_of_states(), sierra::nalu::EquationSystem::realm_, sierra::nalu::Realm::restarted_simulation(), sdr_, sierra::nalu::Realm::support_inconsistent_restart(), tvisc_, visc_, and wTmp_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_non_conformal_bc ( stk::mesh::Part *  part,
const stk::topology &  theTopo 
)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::AlgorithmDriver::algMap_, assembleNodalGradAlgDriver_, dwdx_, sierra::nalu::EquationSystem::edgeNodalGradient_, evisc_, sierra::nalu::NON_CONFORMAL, sierra::nalu::EquationSystem::realm_, sdr_, sierra::nalu::EquationSystem::solverAlgDriver_, and sierra::nalu::SolverAlgorithmDriver::solverAlgMap_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_open_bc ( stk::mesh::Part *  part,
const stk::topology &  theTopo,
const OpenBoundaryConditionData &  openBCData 
)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::AlgorithmDriver::algMap_, assembleNodalGradAlgDriver_, sierra::nalu::EquationSystem::bcDataAlg_, dwdx_, sierra::nalu::EquationSystem::edgeNodalGradient_, evisc_, sierra::nalu::Realm::meta_data(), sierra::nalu::OPEN, sierra::nalu::EquationSystem::realm_, sierra::nalu::Realm::realmUsesEdges_, sdr_, sierra::nalu::OpenUserData::sdr_, sierra::nalu::EquationSystem::solverAlgDriver_, sierra::nalu::SolverAlgorithmDriver::solverAlgMap_, sierra::nalu::SpecDissRate::specDissRate_, and sierra::nalu::OpenBoundaryConditionData::userData_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_overset_bc ( )
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::EquationSystem::create_constraint_algorithm(), sierra::nalu::EquationSystem::equationSystems_, sierra::nalu::UpdateOversetFringeAlgorithmDriver::fields_, sierra::nalu::EquationSystems::preIterAlgDriver_, sierra::nalu::EquationSystem::realm_, and sdr_.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_symmetry_bc ( stk::mesh::Part *  part,
const stk::topology &  theTopo,
const SymmetryBoundaryConditionData &  symmetryBCData 
)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::AlgorithmDriver::algMap_, assembleNodalGradAlgDriver_, dwdx_, sierra::nalu::EquationSystem::edgeNodalGradient_, sierra::nalu::EquationSystem::realm_, sdr_, and sierra::nalu::SYMMETRY.

void sierra::nalu::SpecificDissipationRateEquationSystem::register_wall_bc ( stk::mesh::Part *  part,
const stk::topology &  theTopo,
const WallBoundaryConditionData &  wallBCData 
)
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::AlgorithmDriver::algMap_, assembledWallArea_, assembledWallSdr_, assembleNodalGradAlgDriver_, dwdx_, sierra::nalu::EquationSystem::edgeNodalGradient_, sierra::nalu::Realm::meta_data(), sierra::nalu::EquationSystem::realm_, sierra::nalu::Realm::realmUsesEdges_, sdr_, sdrWallBc_, sierra::nalu::EquationSystem::solverAlgDriver_, sierra::nalu::SolverAlgorithmDriver::solverDirichAlgMap_, sierra::nalu::WallBoundaryConditionData::userData_, sierra::nalu::WALL, sierra::nalu::WallUserData::wallFunctionApproach_, and wallModelAlg_.

void sierra::nalu::SpecificDissipationRateEquationSystem::reinitialize_linear_system ( )
virtual

Reimplemented from sierra::nalu::EquationSystem.

References sierra::nalu::LinearSystem::create(), sierra::nalu::LinearSolvers::create_solver(), sierra::nalu::EQ_SPEC_DISS_RATE, sierra::nalu::Realm::equationSystems_, sierra::nalu::LinearSystem::finalizeLinearSystem(), sierra::nalu::EquationSystems::get_solver_block_name(), sierra::nalu::SolverAlgorithmDriver::initialize_connectivity(), sierra::nalu::Simulation::linearSolvers_, sierra::nalu::EquationSystem::linsys_, sierra::nalu::EquationSystem::realm_, sierra::nalu::Realm::root(), sierra::nalu::EquationSystem::solverAlgDriver_, and sierra::nalu::LinearSolvers::solvers_.

Member Data Documentation

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::assembledWallArea_

Referenced by compute_wall_model_parameters(), and register_wall_bc().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::assembledWallSdr_

Referenced by compute_wall_model_parameters(), and register_wall_bc().

AssembleNodalGradAlgorithmDriver* sierra::nalu::SpecificDissipationRateEquationSystem::assembleNodalGradAlgDriver_

Referenced by assemble_nodal_gradient(), register_inflow_bc(), register_interior_algorithm(), register_non_conformal_bc(), register_open_bc(), register_symmetry_bc(), register_wall_bc(), and ~SpecificDissipationRateEquationSystem().

AlgorithmDriver* sierra::nalu::SpecificDissipationRateEquationSystem::diffFluxCoeffAlgDriver_

Referenced by compute_effective_diff_flux_coeff(), register_interior_algorithm(), and ~SpecificDissipationRateEquationSystem().

VectorFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::dwdx_

Referenced by sierra::nalu::ShearStressTransportEquationSystem::compute_f_one_blending(), register_inflow_bc(), register_interior_algorithm(), register_nodal_fields(), register_non_conformal_bc(), register_open_bc(), register_symmetry_bc(), and register_wall_bc().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::evisc_

Referenced by register_interior_algorithm(), register_nodal_fields(), register_non_conformal_bc(), and register_open_bc().

const bool sierra::nalu::SpecificDissipationRateEquationSystem::managePNG_

Referenced by SpecificDissipationRateEquationSystem().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::sdr_

Referenced by compute_wall_model_parameters(), predict_state(), register_inflow_bc(), register_interior_algorithm(), register_nodal_fields(), register_non_conformal_bc(), register_open_bc(), register_overset_bc(), register_symmetry_bc(), and register_wall_bc().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::sdrWallBc_

Referenced by compute_wall_model_parameters(), and register_wall_bc().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::tvisc_

Referenced by register_interior_algorithm(), and register_nodal_fields().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::visc_

Referenced by register_interior_algorithm(), and register_nodal_fields().

std::vector<Algorithm *> sierra::nalu::SpecificDissipationRateEquationSystem::wallModelAlg_

Referenced by compute_wall_model_parameters(), register_wall_bc(), and ~SpecificDissipationRateEquationSystem().

ScalarFieldType* sierra::nalu::SpecificDissipationRateEquationSystem::wTmp_

Referenced by register_nodal_fields(), sierra::nalu::ShearStressTransportEquationSystem::solve_and_update(), and sierra::nalu::ShearStressTransportEquationSystem::update_and_clip().

The documentation for this class was generated from the following files:
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