#include <Realm.h>

Inheritance diagram for sierra::nalu::Realm:

Classes
struct	BalanceNodeOptions

Public Types
typedef size_t	SizeType

Public Member Functions
	Realm (Realms &, const YAML::Node &node)

virtual	~Realm ()

virtual void	load (const YAML::Node &node)

void	look_ahead_and_creation (const YAML::Node &node)

virtual void	breadboard ()

virtual void	initialize ()

Simulation *	root () const

Simulation *	root ()

Realms *	parent () const

Realms *	parent ()

bool	debug () const

bool	get_activate_memory_diagnostic ()

void	provide_memory_summary ()

std::string	convert_bytes (double bytes)

void	create_mesh ()

void	setup_adaptivity ()

void	setup_nodal_fields ()

void	setup_edge_fields ()

void	setup_element_fields ()

void	setup_interior_algorithms ()

void	setup_post_processing_algorithms ()

void	setup_bc ()

void	enforce_bc_on_exposed_faces ()

void	setup_initial_conditions ()

void	setup_property ()

void	extract_universal_constant (const std::string name, double &value, const bool useDefault)

void	augment_property_map (PropertyIdentifier propID, ScalarFieldType *theField)

void	makeSureNodesHaveValidTopology ()

void	initialize_global_variables ()

void	balance_nodes ()

void	create_output_mesh ()

void	create_restart_mesh ()

void	input_variables_from_mesh ()

void	augment_output_variable_list (const std::string fieldName)

void	augment_restart_variable_list (std::string restartFieldName)

void	create_edges ()

void	provide_entity_count ()

void	delete_edges ()

void	commit ()

void	process_mesh_motion ()

void	compute_centroid_on_parts (std::vector< std::string > partNames, std::vector< double > &centroid)

void	init_current_coordinates ()

std::string	get_coordinates_name ()

bool	has_mesh_motion ()

bool	has_mesh_deformation ()

bool	does_mesh_move ()

bool	has_non_matching_boundary_face_alg ()

bool	query_for_overset ()

void	set_omega (stk::mesh::Part *targetPart, double omega)

void	set_current_displacement (stk::mesh::Part *targetPart, const std::vector< double > &centroidCoords, const std::vector< double > &unitVec)

void	set_current_coordinates (stk::mesh::Part *targetPart)

void	set_mesh_velocity (stk::mesh::Part *targetPart, const std::vector< double > &centroidCoords, const std::vector< double > &unitVec)

void	mesh_velocity_cross_product (double o, double c, double *u)

void	initialize_non_conformal ()

void	initialize_overset ()

void	initialize_post_processing_algorithms ()

void	compute_geometry ()

void	compute_vrtm ()

void	compute_l2_scaling ()

void	output_converged_results ()

void	provide_output ()

void	provide_restart_output ()

void	register_interior_algorithm (stk::mesh::Part *part)

void	register_nodal_fields (stk::mesh::Part *part)

void	register_wall_bc (stk::mesh::Part *part, const stk::topology &theTopo)

void	register_inflow_bc (stk::mesh::Part *part, const stk::topology &theTopo)

void	register_open_bc (stk::mesh::Part *part, const stk::topology &theTopo)

void	register_symmetry_bc (stk::mesh::Part *part, const stk::topology &theTopo)

void	register_periodic_bc (stk::mesh::Part masterMeshPart, stk::mesh::Part slaveMeshPart, const double &searchTolerance, const std::string &searchMethodName)

void	setup_non_conformal_bc (stk::mesh::PartVector currentPartVec, stk::mesh::PartVector opposingPartVec, const NonConformalBoundaryConditionData &nonConformalBCData)

void	register_non_conformal_bc (stk::mesh::Part *part, const stk::topology &theTopo)

void	setup_overset_bc (const OversetBoundaryConditionData &oversetBCData)

void	periodic_field_update (stk::mesh::FieldBase *theField, const unsigned &sizeOfTheField, const bool &bypassFieldCheck=true) const

void	periodic_delta_solution_update (stk::mesh::FieldBase *theField, const unsigned &sizeOfField) const

void	periodic_max_field_update (stk::mesh::FieldBase *theField, const unsigned &sizeOfField) const

const stk::mesh::PartVector &	get_slave_part_vector ()

void	overset_orphan_node_field_update (stk::mesh::FieldBase *theField, const unsigned sizeRow, const unsigned sizeCol)

virtual void	populate_initial_condition ()

virtual void	populate_boundary_data ()

virtual void	boundary_data_to_state_data ()

virtual double	populate_variables_from_input (const double currentTime)

virtual void	populate_external_variables_from_input (const double currentTime)

virtual double	populate_restart (double &timeStepNm1, int &timeStepCount)

virtual void	populate_derived_quantities ()

virtual void	evaluate_properties ()

virtual double	compute_adaptive_time_step ()

virtual void	swap_states ()

virtual void	predict_state ()

virtual void	pre_timestep_work ()

virtual void	output_banner ()

virtual void	advance_time_step ()

virtual void	initial_work ()

void	set_global_id ()

void	check_job (bool get_node_count)
	check job for fitting in memory More...

void	dump_simulation_time ()

double	provide_mean_norm ()

double	get_hybrid_factor (const std::string dofname)

double	get_alpha_factor (const std::string dofname)

double	get_alpha_upw_factor (const std::string dofname)

double	get_upw_factor (const std::string dofname)

bool	primitive_uses_limiter (const std::string dofname)

double	get_lam_schmidt (const std::string dofname)

double	get_lam_prandtl (const std::string dofname, bool &prProvided)

double	get_turb_schmidt (const std::string dofname)

double	get_turb_prandtl (const std::string dofname)

bool	get_noc_usage (const std::string dofname)

bool	get_shifted_grad_op (const std::string dofname)

double	get_divU ()

std::string	get_tanh_functional_form (const std::string dofname)

double	get_tanh_trans (const std::string dofname)

double	get_tanh_width (const std::string dofname)

bool	get_consistent_mass_matrix_png (const std::string dofname)

double	get_mdot_interp ()

bool	get_cvfem_shifted_mdot ()

bool	get_cvfem_reduced_sens_poisson ()

bool	has_nc_gauss_labatto_quadrature ()

bool	get_nc_alg_upwind_advection ()

bool	get_nc_alg_include_pstab ()

bool	get_nc_alg_current_normal ()

PropertyEvaluator *	get_material_prop_eval (const PropertyIdentifier thePropID)

bool	is_turbulent ()

void	is_turbulent (bool isIt)

bool	needs_enthalpy ()

void	needs_enthalpy (bool needsEnthalpy)

int	number_of_states ()

std::string	name ()

stk::mesh::BucketVector const &	get_buckets (stk::mesh::EntityRank rank, const stk::mesh::Selector &selector, bool get_all=false) const

bool	get_activate_aura ()

stk::mesh::BulkData &	bulk_data ()

stk::mesh::MetaData &	meta_data ()

stk::mesh::Selector	get_inactive_selector ()

void	push_equation_to_systems (EquationSystem *eqSystem)

const std::vector< std::string > &	get_physics_target_names ()

double	get_tanh_blending (const std::string dofName)

void	augment_transfer_vector (Transfer transfer, const std::string transferObjective, Realm toRealm)

void	process_multi_physics_transfer ()

void	process_initialization_transfer ()

void	process_io_transfer ()

void	process_external_data_transfer ()

void	post_converged_work ()

double	get_current_time ()

double	get_time_step ()

double	get_gamma1 ()

double	get_gamma2 ()

double	get_gamma3 ()

int	get_time_step_count () const

double	get_time_step_from_file ()

bool	get_is_fixed_time_step ()

bool	get_is_terminate_based_on_time ()

double	get_total_sim_time ()

int	get_max_time_step_count ()

bool	restarted_simulation ()

bool	support_inconsistent_restart ()

double	get_stefan_boltzmann ()

double	get_turb_model_constant (const TurbulenceModelConstant turbModelEnum)

bool	process_adaptivity ()

void	setup_element_promotion ()

void	promote_mesh ()

void	create_promoted_output_mesh ()

bool	using_SGL_quadrature () const

bool	high_order_active () const

std::string	physics_part_name (std::string) const

std::string	get_quad_type () const

Public Attributes
Realms &	realms_

std::string	name_

std::string	type_

std::string	inputDBName_

unsigned	spatialDimension_

bool	realmUsesEdges_

int	solveFrequency_

bool	isTurbulent_

bool	needsEnthalpy_

double	l2Scaling_

stk::mesh::MetaData *	metaData_

stk::mesh::BulkData *	bulkData_

stk::io::StkMeshIoBroker *	ioBroker_

size_t	resultsFileIndex_

size_t	restartFileIndex_

GlobalIdFieldType *	naluGlobalId_

ComputeGeometryAlgorithmDriver *	computeGeometryAlgDriver_

ErrorIndicatorAlgorithmDriver *	errorIndicatorAlgDriver_

unsigned	numInitialElements_

stk::mesh::Selector	adapterSelector_ [4]

Teuchos::RCP< stk::mesh::Selector >	activePartForIO_

TimeIntegrator *	timeIntegrator_

BoundaryConditions	boundaryConditions_

InitialConditions	initialConditions_

MaterialPropertys	materialPropertys_

EquationSystems	equationSystems_

double	maxCourant_

double	maxReynolds_

double	targetCourant_

double	timeStepChangeFactor_

int	currentNonlinearIteration_

SolutionOptions *	solutionOptions_

OutputInfo *	outputInfo_

PostProcessingInfo *	postProcessingInfo_

SolutionNormPostProcessing *	solutionNormPostProcessing_

TurbulenceAveragingPostProcessing *	turbulenceAveragingPostProcessing_

DataProbePostProcessing *	dataProbePostProcessing_

Actuator *	actuator_

ABLForcingAlgorithm *	ablForcingAlg_

std::vector< Algorithm * >	propertyAlg_

std::map< PropertyIdentifier, ScalarFieldType * >	propertyMap_

std::vector< Algorithm * >	initCondAlg_

SizeType	nodeCount_

bool	estimateMemoryOnly_

double	availableMemoryPerCoreGB_

double	timerCreateMesh_

double	timerPopulateMesh_

double	timerPopulateFieldData_

double	timerOutputFields_

double	timerCreateEdges_

double	timerNonconformal_

double	timerInitializeEqs_

double	timerPropertyEval_

double	timerAdapt_

double	timerTransferSearch_

double	timerTransferExecute_

double	timerSkinMesh_

double	timerPromoteMesh_

NonConformalManager *	nonConformalManager_

OversetManager *	oversetManager_

bool	hasNonConformal_

bool	hasOverset_

bool	hasMultiPhysicsTransfer_

bool	hasInitializationTransfer_

bool	hasIoTransfer_

bool	hasExternalDataTransfer_

PeriodicManager *	periodicManager_

bool	hasPeriodic_

bool	hasFluids_

stk::util::ParameterList	globalParameters_

stk::mesh::Part *	exposedBoundaryPart_

stk::mesh::Part *	edgesPart_

bool	checkForMissingBcs_

bool	isothermalFlow_

bool	uniformFlow_

bool	provideEntityCount_

HDF5FilePtr *	HDF5ptr_

std::string	autoDecompType_

bool	activateAura_

bool	activateMemoryDiagnostic_

bool	supportInconsistentRestart_

bool	doBalanceNodes_

BalanceNodeOptions	balanceNodeOptions_

double	wallTimeStart_

stk::mesh::PartVector	bcPartVec_

stk::mesh::PartVector	emptyPartVector_

stk::mesh::PartVector	basePartVector_

stk::mesh::PartVector	superPartVector_

std::vector< AuxFunctionAlgorithm * >	bcDataAlg_

std::vector< Transfer * >	multiPhysicsTransferVec_

std::vector< Transfer * >	initializationTransferVec_

std::vector< Transfer * >	ioTransferVec_

std::vector< Transfer * >	externalDataTransferVec_

bool	doPromotion_

unsigned	promotionOrder_

size_t	inputMeshIdx_

const YAML::Node &	node_

std::unique_ptr< ElementDescription >	desc_

std::unique_ptr< PromotedElementIO >	promotionIO_

std::vector< std::string >	superTargetNames_

stk::mesh::PartVector	allPeriodicInteractingParts_

stk::mesh::PartVector	allNonConformalInteractingParts_

Member Typedef Documentation

typedef size_t sierra::nalu::Realm::SizeType

Constructor & Destructor Documentation

sierra::nalu::Realm::Realm	(	Realms &	realms,
		const YAML::Node &	node
	)

References look_ahead_and_creation().

sierra::nalu::Realm::~Realm ( )

virtual

References ablForcingAlg_, actuator_, bcDataAlg_, bulkData_, sierra::nalu::MasterElementRepo::clear(), computeGeometryAlgDriver_, errorIndicatorAlgDriver_, HDF5ptr_, initCondAlg_, ioBroker_, metaData_, nonConformalManager_, outputInfo_, periodicManager_, postProcessingInfo_, propertyAlg_, solutionNormPostProcessing_, solutionOptions_, and turbulenceAveragingPostProcessing_.

Member Function Documentation

void sierra::nalu::Realm::augment_output_variable_list ( const std::string fieldName )

References sierra::nalu::OutputInfo::outputFieldNameSet_, and outputInfo_.

Referenced by sierra::nalu::LowMachEquationSystem::register_surface_pp_algorithm().

void sierra::nalu::Realm::augment_property_map	(	PropertyIdentifier	propID,
		ScalarFieldType *	theField
	)

References propertyMap_.

Referenced by sierra::nalu::MeshDisplacementEquationSystem::register_nodal_fields(), sierra::nalu::RadiativeTransportEquationSystem::register_nodal_fields(), sierra::nalu::HeatCondEquationSystem::register_nodal_fields(), sierra::nalu::EnthalpyEquationSystem::register_nodal_fields(), and sierra::nalu::LowMachEquationSystem::register_nodal_fields().

void sierra::nalu::Realm::augment_restart_variable_list ( std::string restartFieldName )

References outputInfo_, and sierra::nalu::OutputInfo::restartFieldNameSet_.

void sierra::nalu::Realm::augment_transfer_vector	(	Transfer *	transfer,
		const std::string	transferObjective,
		Realm *	toRealm
	)

References externalDataTransferVec_, hasExternalDataTransfer_, hasInitializationTransfer_, hasIoTransfer_, hasMultiPhysicsTransfer_, initializationTransferVec_, ioTransferVec_, and multiPhysicsTransferVec_.

Referenced by sierra::nalu::Transfer::breadboard().

void sierra::nalu::Realm::balance_nodes ( )

References sierra::nalu::InterfaceBalancer::balance_node_entities(), balanceNodeOptions_, bulk_data(), meta_data(), sierra::nalu::Realm::BalanceNodeOptions::numIters, and sierra::nalu::Realm::BalanceNodeOptions::target.

Referenced by initialize().

void sierra::nalu::Realm::boundary_data_to_state_data ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References sierra::nalu::EquationSystems::boundary_data_to_state_data(), and equationSystems_.

void sierra::nalu::Realm::breadboard ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References sierra::nalu::EquationSystems::breadboard(), computeGeometryAlgDriver_, and equationSystems_.

stk::mesh::BulkData & sierra::nalu::Realm::bulk_data ( )

References bulkData_.

void sierra::nalu::Realm::check_job ( bool get_node_count )

check job for fitting in memory

estimate memory based on N*bandwidth, N = nodeCount*nDOF, bandwidth = NCon(=27 for Hex mesh)*nDOF - we are very conservative here

References availableMemoryPerCoreGB_, bulkData_, doPromotion_, equationSystems_, estimateMemoryOnly_, ioBroker_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), name_, nodeCount_, promotionOrder_, sierra::nalu::NaluEnv::self(), sierra::nalu::EquationSystems::size(), and spatialDimension_.

Referenced by initialize(), and load().

void sierra::nalu::Realm::commit ( )

References metaData_.

double sierra::nalu::Realm::compute_adaptive_time_step ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References get_time_step(), maxCourant_, targetCourant_, and timeStepChangeFactor_.

void sierra::nalu::Realm::compute_centroid_on_parts	(	std::vector< std::string >	partNames,
		std::vector< double > &	centroid
	)

References bulkData_, metaData_, sierra::nalu::NaluEnv::parallel_comm(), and sierra::nalu::NaluEnv::self().

Referenced by process_mesh_motion().

void sierra::nalu::Realm::compute_geometry ( )

References bulkData_, computeGeometryAlgDriver_, does_mesh_move(), sierra::nalu::AlgorithmDriver::execute(), metaData_, sierra::nalu::NaluEnv::naluOutputP0(), and sierra::nalu::NaluEnv::self().

Referenced by advance_time_step(), initialize(), and pre_timestep_work().

void sierra::nalu::Realm::compute_l2_scaling ( )

References bulkData_, get_physics_target_names(), l2Scaling_, metaData_, and sierra::nalu::NaluEnv::self().

Referenced by initialize().

void sierra::nalu::Realm::compute_vrtm ( )

References bulkData_, sierra::nalu::SolutionOptions::externalMeshDeformation_, sierra::nalu::SolutionOptions::meshMotion_, metaData_, and solutionOptions_.

Referenced by advance_time_step(), sierra::nalu::MomentumEquationSystem::initial_work(), and sierra::nalu::LowMachEquationSystem::solve_and_update().

std::string sierra::nalu::Realm::convert_bytes ( double bytes )

Referenced by provide_memory_summary().

void sierra::nalu::Realm::create_edges ( )

References adapterSelector_, bulkData_, edgesPart_, sierra::nalu::SolutionOptions::maxRefinementLevel_, metaData_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::naluOutputP0(), name_, sierra::nalu::Simulation::rootTimer(), sierra::nalu::NaluEnv::self(), solutionOptions_, timerCreateEdges_, and sierra::nalu::SolutionOptions::useAdapter_.

Referenced by initialize(), and pre_timestep_work().

void sierra::nalu::Realm::create_mesh ( )

void sierra::nalu::Realm::create_output_mesh ( )

Referenced by sierra::nalu::InputOutputRealm::initialize(), initialize(), and provide_output().

void sierra::nalu::Realm::create_promoted_output_mesh ( )

References bulkData_, desc_, sierra::nalu::OutputInfo::hasOutputBlock_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::OutputInfo::outputDBName_, sierra::nalu::OutputInfo::outputFieldNameSet_, sierra::nalu::OutputInfo::outputFreq_, outputInfo_, promotionIO_, and sierra::nalu::NaluEnv::self().

Referenced by initialize().

void sierra::nalu::Realm::create_restart_mesh ( )

References globalParameters_, sierra::nalu::OutputInfo::hasRestartBlock_, ioBroker_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), outputInfo_, sierra::nalu::OutputInfo::restartDBName_, restarted_simulation(), sierra::nalu::OutputInfo::restartFieldNameSet_, restartFileIndex_, sierra::nalu::OutputInfo::restartFreq_, sierra::nalu::OutputInfo::restartMaxDataBaseStepSize_, sierra::nalu::OutputInfo::restartPropertyManager_, and sierra::nalu::NaluEnv::self().

Referenced by initialize().

bool sierra::nalu::Realm::debug ( ) const

References sierra::nalu::Simulation::debug_, and root().

Referenced by delete_edges(), sierra::nalu::ErrorIndicatorAlgorithmDriver::post_work(), sierra::nalu::TpetraLinearSystem::solve(), sierra::nalu::ShearStressTransportEquationSystem::update_and_clip(), and sierra::nalu::TurbKineticEnergyEquationSystem::update_and_clip().

void sierra::nalu::Realm::delete_edges ( )

References bulkData_, debug(), edgesPart_, sierra::nalu::SolutionOptions::maxRefinementLevel_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::NaluEnv::self(), solutionOptions_, and sierra::nalu::SolutionOptions::useAdapter_.

Referenced by pre_timestep_work().

bool sierra::nalu::Realm::does_mesh_move ( )

References has_mesh_deformation(), and has_mesh_motion().

Referenced by compute_geometry(), sierra::nalu::MomentumNSOElemSuppAlgDep::MomentumNSOElemSuppAlgDep(), sierra::nalu::MomentumNSOGradElemSuppAlg::MomentumNSOGradElemSuppAlg(), sierra::nalu::MomentumNSOKeElemSuppAlgDep::MomentumNSOKeElemSuppAlgDep(), sierra::nalu::ScalarNSOElemSuppAlgDep::ScalarNSOElemSuppAlgDep(), and sierra::nalu::ScalarNSOKeElemSuppAlg::ScalarNSOKeElemSuppAlg().

void sierra::nalu::Realm::dump_simulation_time ( )

References checkForMissingBcs_, doPromotion_, sierra::nalu::EquationSystems::dump_eq_time(), equationSystems_, sierra::nalu::PeriodicManager::get_search_time(), has_non_matching_boundary_face_alg(), hasExternalDataTransfer_, hasInitializationTransfer_, hasIoTransfer_, hasMultiPhysicsTransfer_, hasOverset_, hasPeriodic_, sierra::nalu::SolutionOptions::maxRefinementLevel_, sierra::nalu::NaluEnv::naluOutputP0(), name_, sierra::nalu::NaluEnv::parallel_size(), periodicManager_, realmUsesEdges_, sierra::nalu::NaluEnv::self(), solutionOptions_, timerAdapt_, timerCreateEdges_, timerCreateMesh_, timerInitializeEqs_, timerNonconformal_, timerOutputFields_, timerPopulateFieldData_, timerPopulateMesh_, timerPromoteMesh_, timerPropertyEval_, timerSkinMesh_, timerTransferExecute_, timerTransferSearch_, and sierra::nalu::SolutionOptions::useAdapter_.

Referenced by provide_output().

void sierra::nalu::Realm::enforce_bc_on_exposed_faces ( )

References bcPartVec_, bulkData_, exposedBoundaryPart_, metaData_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::naluOutput(), sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::NaluEnv::self(), and timerSkinMesh_.

Referenced by initialize().

void sierra::nalu::Realm::evaluate_properties ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References equationSystems_, sierra::nalu::EquationSystems::evaluate_properties(), sierra::nalu::NaluEnv::nalu_time(), propertyAlg_, sierra::nalu::NaluEnv::self(), and timerPropertyEval_.

Referenced by advance_time_step(), and sierra::nalu::EquationSystems::post_adapt_work().

void sierra::nalu::Realm::extract_universal_constant	(	const std::string	name,
		double &	value,
		const bool	useDefault
	)

References materialPropertys_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::NaluEnv::self(), and sierra::nalu::MaterialPropertys::universalConstantMap_.

Referenced by setup_property().

bool sierra::nalu::Realm::get_activate_aura ( )

References activateAura_.

bool sierra::nalu::Realm::get_activate_memory_diagnostic ( )

References activateMemoryDiagnostic_.

Referenced by sierra::nalu::EquationSystems::initialize(), sierra::nalu::TpetraLinearSystem::solve(), and sierra::nalu::EquationSystems::solve_and_update().

double sierra::nalu::Realm::get_alpha_factor ( const std::string dofname )

References sierra::nalu::SolutionOptions::alphaDefault_, sierra::nalu::SolutionOptions::alphaMap_, and solutionOptions_.

Referenced by sierra::nalu::AssembleMomentumEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarEdgeSolverAlgorithm::execute(), and sierra::nalu::AssembleScalarEigenEdgeSolverAlgorithm::execute().

double sierra::nalu::Realm::get_alpha_upw_factor ( const std::string dofname )

References sierra::nalu::SolutionOptions::alphaUpwDefault_, sierra::nalu::SolutionOptions::alphaUpwMap_, and solutionOptions_.

Referenced by sierra::nalu::AssembleMomentumEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemOpenSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleScalarElemOpenSolverAlgorithm::execute(), and sierra::nalu::AssembleScalarEigenEdgeSolverAlgorithm::execute().

stk::mesh::BucketVector const & sierra::nalu::Realm::get_buckets	(	stk::mesh::EntityRank	rank,
		const stk::mesh::Selector &	selector,
		bool	get_all = `false`
	)		const

References adapterSelector_, bulkData_, sierra::nalu::SolutionOptions::maxRefinementLevel_, metaData_, solutionOptions_, and sierra::nalu::SolutionOptions::useAdapter_.

bool sierra::nalu::Realm::get_consistent_mass_matrix_png ( const std::string dofname )

References sierra::nalu::SolutionOptions::consistentMassMatrixPngMap_, sierra::nalu::SolutionOptions::consistentMMPngDefault_, and solutionOptions_.

std::string sierra::nalu::Realm::get_coordinates_name ( )

References sierra::nalu::SolutionOptions::externalMeshDeformation_, sierra::nalu::SolutionOptions::meshDeformation_, sierra::nalu::SolutionOptions::meshMotion_, and solutionOptions_.

double sierra::nalu::Realm::get_current_time ( )

References sierra::nalu::TimeIntegrator::get_current_time(), and timeIntegrator_.

Referenced by sierra::nalu::ABLForcingAlgorithm::compute_momentum_sources(), sierra::nalu::ABLForcingAlgorithm::compute_temperature_sources(), sierra::nalu::ActuatorLinePointDrag::create_actuator_line_point_info_map(), sierra::nalu::SurfaceForceAndMomentAlgorithm::execute(), sierra::nalu::SurfaceForceAndMomentWallFunctionAlgorithm::execute(), sierra::nalu::AuxFunctionAlgorithm::execute(), sierra::nalu::SolutionNormPostProcessing::execute(), sierra::nalu::DataProbePostProcessing::execute(), get_tanh_blending(), sierra::nalu::InputOutputRealm::populate_restart(), populate_restart(), provide_output(), provide_restart_output(), and set_current_displacement().

bool sierra::nalu::Realm::get_cvfem_reduced_sens_poisson ( )

References sierra::nalu::SolutionOptions::cvfemReducedSensPoisson_, and solutionOptions_.

bool sierra::nalu::Realm::get_cvfem_shifted_mdot ( )

References sierra::nalu::SolutionOptions::cvfemShiftMdot_, and solutionOptions_.

Referenced by sierra::nalu::ContinuityEquationSystem::register_inflow_bc().

double sierra::nalu::Realm::get_divU ( )

References sierra::nalu::SolutionOptions::includeDivU_, and solutionOptions_.

double sierra::nalu::Realm::get_gamma1 ( )

References sierra::nalu::TimeIntegrator::get_gamma1(), and timeIntegrator_.

double sierra::nalu::Realm::get_gamma2 ( )

References sierra::nalu::TimeIntegrator::get_gamma2(), and timeIntegrator_.

Referenced by sierra::nalu::ComputeMdotAlgorithmDriver::compute_accumulation(), sierra::nalu::ContinuityMassBDF2NodeSuppAlg::setup(), sierra::nalu::HeatCondMassBDF2NodeSuppAlg::setup(), sierra::nalu::MomentumMassBDF2NodeSuppAlg::setup(), sierra::nalu::ScalarMassBDF2NodeSuppAlg::setup(), sierra::nalu::MomentumMassElemSuppAlgDep::setup(), sierra::nalu::ContinuityMassElemSuppAlgDep::setup(), sierra::nalu::ScalarMassElemSuppAlgDep::setup(), sierra::nalu::MomentumNSOElemSuppAlgDep::setup(), and sierra::nalu::ScalarNSOElemSuppAlgDep::setup().

double sierra::nalu::Realm::get_gamma3 ( )

References sierra::nalu::TimeIntegrator::get_gamma3(), and timeIntegrator_.

Referenced by sierra::nalu::ComputeMdotAlgorithmDriver::compute_accumulation(), sierra::nalu::ContinuityMassBDF2NodeSuppAlg::setup(), sierra::nalu::HeatCondMassBDF2NodeSuppAlg::setup(), sierra::nalu::MomentumMassBDF2NodeSuppAlg::setup(), sierra::nalu::ScalarMassBDF2NodeSuppAlg::setup(), sierra::nalu::MomentumMassElemSuppAlgDep::setup(), sierra::nalu::ContinuityMassElemSuppAlgDep::setup(), sierra::nalu::ScalarMassElemSuppAlgDep::setup(), sierra::nalu::MomentumNSOElemSuppAlgDep::setup(), and sierra::nalu::ScalarNSOElemSuppAlgDep::setup().

double sierra::nalu::Realm::get_hybrid_factor ( const std::string dofname )

References sierra::nalu::SolutionOptions::hybridDefault_, sierra::nalu::SolutionOptions::hybridMap_, and solutionOptions_.

Referenced by sierra::nalu::EquationSystem::create_peclet_function().

stk::mesh::Selector sierra::nalu::Realm::get_inactive_selector ( )

References ablForcingAlg_, dataProbePostProcessing_, sierra::nalu::DataProbePostProcessing::get_inactive_selector(), hasOverset_, sierra::nalu::ABLForcingAlgorithm::inactive_selector(), sierra::nalu::OversetManager::inActivePart_, sierra::nalu::OversetManager::orphanPointSurfaceVecBackground_, and oversetManager_.

bool sierra::nalu::Realm::get_is_fixed_time_step ( )

References sierra::nalu::TimeIntegrator::get_is_fixed_time_step(), and timeIntegrator_.

bool sierra::nalu::Realm::get_is_terminate_based_on_time ( )

References sierra::nalu::TimeIntegrator::get_is_terminate_based_on_time(), and timeIntegrator_.

double sierra::nalu::Realm::get_lam_prandtl	(	const std::string	dofname,
		bool &	prProvided
	)

References sierra::nalu::SolutionOptions::lamPrMap_, and solutionOptions_.

Referenced by sierra::nalu::EnthalpyEquationSystem::register_nodal_fields().

double sierra::nalu::Realm::get_lam_schmidt ( const std::string dofname )

References sierra::nalu::SolutionOptions::lamScDefault_, sierra::nalu::SolutionOptions::lamScMap_, and solutionOptions_.

Referenced by sierra::nalu::TurbKineticEnergyEquationSystem::register_interior_algorithm(), sierra::nalu::MassFractionEquationSystem::register_interior_algorithm(), and sierra::nalu::MixtureFractionEquationSystem::register_interior_algorithm().

PropertyEvaluator * sierra::nalu::Realm::get_material_prop_eval ( const PropertyIdentifier thePropID )

References materialPropertys_, and sierra::nalu::MaterialPropertys::propertyEvalMap_.

Referenced by sierra::nalu::EnthalpyEquationSystem::register_interior_algorithm(), and sierra::nalu::EnthalpyEquationSystem::temperature_bc_setup().

int sierra::nalu::Realm::get_max_time_step_count ( )

References sierra::nalu::TimeIntegrator::get_max_time_step_count(), and timeIntegrator_.

double sierra::nalu::Realm::get_mdot_interp ( )

References sierra::nalu::SolutionOptions::mdotInterpRhoUTogether_, and solutionOptions_.

bool sierra::nalu::Realm::get_nc_alg_current_normal ( )

References sierra::nalu::SolutionOptions::ncAlgCurrentNormal_, and solutionOptions_.

bool sierra::nalu::Realm::get_nc_alg_include_pstab ( )

References sierra::nalu::SolutionOptions::ncAlgIncludePstab_, and solutionOptions_.

bool sierra::nalu::Realm::get_nc_alg_upwind_advection ( )

References sierra::nalu::SolutionOptions::ncAlgUpwindAdvection_, and solutionOptions_.

Referenced by sierra::nalu::AssembleMomentumNonConformalSolverAlgorithm::AssembleMomentumNonConformalSolverAlgorithm(), and sierra::nalu::AssembleScalarNonConformalSolverAlgorithm::AssembleScalarNonConformalSolverAlgorithm().

bool sierra::nalu::Realm::get_noc_usage ( const std::string dofname )

References sierra::nalu::SolutionOptions::nocDefault_, sierra::nalu::SolutionOptions::nocMap_, and solutionOptions_.

Referenced by sierra::nalu::ComputeMdotEdgeAlgorithm::execute(), sierra::nalu::ComputeMdotEdgeOpenAlgorithm::execute(), sierra::nalu::ComputeMdotElemOpenAlgorithm::execute(), sierra::nalu::AssembleContinuityEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleContinuityEdgeOpenSolverAlgorithm::execute(), and sierra::nalu::AssembleContinuityElemOpenSolverAlgorithm::execute().

const std::vector< std::string > & sierra::nalu::Realm::get_physics_target_names ( )

References doPromotion_, materialPropertys_, superTargetNames_, and sierra::nalu::MaterialPropertys::targetNames_.

Referenced by compute_l2_scaling(), pre_timestep_work(), sierra::nalu::SolutionNormPostProcessing::setup(), setup_edge_fields(), setup_element_fields(), setup_interior_algorithms(), setup_nodal_fields(), and setup_property().

std::string sierra::nalu::Realm::get_quad_type ( ) const

References sierra::nalu::SolutionOptions::quadType_, and solutionOptions_.

bool sierra::nalu::Realm::get_shifted_grad_op ( const std::string dofname )

References sierra::nalu::SolutionOptions::shiftedGradOpDefault_, sierra::nalu::SolutionOptions::shiftedGradOpMap_, and solutionOptions_.

Referenced by sierra::nalu::AssembleMomentumElemSymmetrySolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemOpenSolverAlgorithm::execute(), and sierra::nalu::AssembleScalarElemSolverAlgorithm::execute().

const stk::mesh::PartVector & sierra::nalu::Realm::get_slave_part_vector ( )

References emptyPartVector_, sierra::nalu::PeriodicManager::get_slave_part_vector(), hasPeriodic_, and periodicManager_.

Referenced by sierra::nalu::TpetraLinearSystem::buildNodeGraph(), sierra::nalu::TpetraLinearSystem::copy_stk_to_tpetra(), sierra::nalu::TpetraLinearSystem::copy_tpetra_to_stk(), and sierra::nalu::AssembleNodeSolverAlgorithm::execute().

double sierra::nalu::Realm::get_stefan_boltzmann ( )

References solutionOptions_, and sierra::nalu::SolutionOptions::stefanBoltzmann_.

Referenced by sierra::nalu::AssembleHeatCondIrradWallSolverAlgorithm::execute(), and sierra::nalu::RadiativeTransportEquationSystem::get_stefan_boltzmann().

double sierra::nalu::Realm::get_tanh_blending ( const std::string dofName )

References sierra::nalu::TanhFunction::execute(), get_current_time(), get_tanh_functional_form(), get_tanh_trans(), and get_tanh_width().

Referenced by set_omega().

std::string sierra::nalu::Realm::get_tanh_functional_form ( const std::string dofname )

References solutionOptions_, sierra::nalu::SolutionOptions::tanhFormDefault_, and sierra::nalu::SolutionOptions::tanhFormMap_.

Referenced by sierra::nalu::EquationSystem::create_peclet_function(), get_tanh_blending(), and sierra::nalu::WindEnergyAuxFunction::WindEnergyAuxFunction().

double sierra::nalu::Realm::get_tanh_trans ( const std::string dofname )

References solutionOptions_, sierra::nalu::SolutionOptions::tanhTransDefault_, and sierra::nalu::SolutionOptions::tanhTransMap_.

Referenced by sierra::nalu::EquationSystem::create_peclet_function(), get_tanh_blending(), and sierra::nalu::WindEnergyAuxFunction::WindEnergyAuxFunction().

double sierra::nalu::Realm::get_tanh_width ( const std::string dofname )

References solutionOptions_, sierra::nalu::SolutionOptions::tanhWidthDefault_, and sierra::nalu::SolutionOptions::tanhWidthMap_.

Referenced by sierra::nalu::EquationSystem::create_peclet_function(), get_tanh_blending(), and sierra::nalu::WindEnergyAuxFunction::WindEnergyAuxFunction().

double sierra::nalu::Realm::get_time_step ( )

References sierra::nalu::TimeIntegrator::get_time_step(), and timeIntegrator_.

int sierra::nalu::Realm::get_time_step_count ( ) const

References sierra::nalu::TimeIntegrator::get_time_step_count(), and timeIntegrator_.

Referenced by advance_time_step(), sierra::nalu::ABLForcingAlgorithm::compute_momentum_sources(), sierra::nalu::ABLForcingAlgorithm::compute_temperature_sources(), sierra::nalu::SurfaceForceAndMomentAlgorithm::execute(), sierra::nalu::SurfaceForceAndMomentWallFunctionAlgorithm::execute(), sierra::nalu::SolutionNormPostProcessing::execute(), sierra::nalu::DataProbePostProcessing::execute(), pre_timestep_work(), process_adaptivity(), process_io_transfer(), provide_output(), and provide_restart_output().

double sierra::nalu::Realm::get_time_step_from_file ( )

References sierra::nalu::TimeIntegrator::get_time_step_from_file(), and timeIntegrator_.

double sierra::nalu::Realm::get_total_sim_time ( )

References sierra::nalu::TimeIntegrator::get_total_sim_time(), and timeIntegrator_.

double sierra::nalu::Realm::get_turb_model_constant ( const TurbulenceModelConstant turbModelEnum )

References solutionOptions_, and sierra::nalu::SolutionOptions::turbModelConstantMap_.

Referenced by sierra::nalu::ShearStressTransportEquationSystem::compute_f_one_blending(), sierra::nalu::TurbKineticEnergyEquationSystem::register_interior_algorithm(), and sierra::nalu::SpecificDissipationRateEquationSystem::register_interior_algorithm().

double sierra::nalu::Realm::get_turb_prandtl ( const std::string dofname )

References solutionOptions_, sierra::nalu::SolutionOptions::turbPrDefault_, and sierra::nalu::SolutionOptions::turbPrMap_.

Referenced by sierra::nalu::EnthalpyEquationSystem::register_interior_algorithm().

double sierra::nalu::Realm::get_turb_schmidt ( const std::string dofname )

References solutionOptions_, sierra::nalu::SolutionOptions::turbScDefault_, and sierra::nalu::SolutionOptions::turbScMap_.

Referenced by sierra::nalu::TurbKineticEnergyEquationSystem::register_interior_algorithm(), sierra::nalu::SpecificDissipationRateEquationSystem::register_interior_algorithm(), sierra::nalu::MassFractionEquationSystem::register_interior_algorithm(), and sierra::nalu::MixtureFractionEquationSystem::register_interior_algorithm().

double sierra::nalu::Realm::get_upw_factor ( const std::string dofname )

References solutionOptions_, sierra::nalu::SolutionOptions::upwDefault_, and sierra::nalu::SolutionOptions::upwMap_.

Referenced by sierra::nalu::AssembleMomentumEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemOpenSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleScalarElemOpenSolverAlgorithm::execute(), and sierra::nalu::AssembleScalarEigenEdgeSolverAlgorithm::execute().

bool sierra::nalu::Realm::has_mesh_deformation ( )

References sierra::nalu::SolutionOptions::externalMeshDeformation_, sierra::nalu::SolutionOptions::meshDeformation_, and solutionOptions_.

Referenced by does_mesh_move(), initialize(), and pre_timestep_work().

bool sierra::nalu::Realm::has_mesh_motion ( )

References sierra::nalu::SolutionOptions::meshMotion_, and solutionOptions_.

Referenced by does_mesh_move(), and sierra::nalu::OversetManager::initialize().

bool sierra::nalu::Realm::has_nc_gauss_labatto_quadrature ( )

References sierra::nalu::SolutionOptions::ncAlgGaussLabatto_, and solutionOptions_.

Referenced by sierra::nalu::NonConformalInfo::construct_dgInfo_state().

bool sierra::nalu::Realm::has_non_matching_boundary_face_alg ( )

References hasNonConformal_, and hasOverset_.

Referenced by dump_simulation_time(), and sierra::nalu::TpetraLinearSystem::getDofStatus().

bool sierra::nalu::Realm::high_order_active ( ) const

inline

void sierra::nalu::Realm::init_current_coordinates ( )

References bulkData_, and metaData_.

Referenced by initialize().

void sierra::nalu::Realm::initial_work ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References equationSystems_, sierra::nalu::EquationSystems::initial_work(), sierra::nalu::SolutionOptions::meshMotion_, process_mesh_motion(), and solutionOptions_.

void sierra::nalu::Realm::initialize ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References balance_nodes(), sierra::nalu::PeriodicManager::build_constraints(), check_job(), checkForMissingBcs_, compute_geometry(), compute_l2_scaling(), create_edges(), create_output_mesh(), create_promoted_output_mesh(), create_restart_mesh(), doBalanceNodes_, doPromotion_, enforce_bc_on_exposed_faces(), equationSystems_, has_mesh_deformation(), hasNonConformal_, hasOverset_, hasPeriodic_, init_current_coordinates(), sierra::nalu::EquationSystems::initialize(), initialize_global_variables(), initialize_non_conformal(), initialize_overset(), initialize_post_processing_algorithms(), input_variables_from_mesh(), ioBroker_, sierra::nalu::SolutionOptions::meshMotion_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::naluOutputP0(), periodicManager_, populate_boundary_data(), process_mesh_motion(), promote_mesh(), provide_entity_count(), provideEntityCount_, realmUsesEdges_, sierra::nalu::NaluEnv::self(), set_global_id(), setup_adaptivity(), setup_bc(), setup_edge_fields(), setup_element_fields(), setup_element_promotion(), setup_initial_conditions(), setup_interior_algorithms(), setup_nodal_fields(), setup_post_processing_algorithms(), setup_property(), solutionOptions_, timerPopulateFieldData_, and timerPopulateMesh_.

void sierra::nalu::Realm::initialize_global_variables ( )

References globalParameters_, and turbulenceAveragingPostProcessing_.

Referenced by initialize().

void sierra::nalu::Realm::initialize_non_conformal ( )

References sierra::nalu::NonConformalManager::initialize(), and nonConformalManager_.

Referenced by initialize(), and pre_timestep_work().

void sierra::nalu::Realm::initialize_overset ( )

References sierra::nalu::OversetManager::initialize(), and oversetManager_.

Referenced by initialize(), and pre_timestep_work().

void sierra::nalu::Realm::initialize_post_processing_algorithms ( )

References ablForcingAlg_, actuator_, dataProbePostProcessing_, sierra::nalu::Actuator::initialize(), sierra::nalu::DataProbePostProcessing::initialize(), and sierra::nalu::ABLForcingAlgorithm::initialize().

Referenced by initialize().

void sierra::nalu::Realm::input_variables_from_mesh ( )

References inputMeshIdx_, sierra::nalu::SolutionOptions::inputVarFromFileMap_, sierra::nalu::SolutionOptions::inputVariablesInterpolateInTime_, sierra::nalu::SolutionOptions::inputVariablesPeriodicTime_, sierra::nalu::SolutionOptions::inputVariablesRestorationTime_, ioBroker_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), restarted_simulation(), sierra::nalu::NaluEnv::self(), and solutionOptions_.

Referenced by sierra::nalu::InputOutputRealm::initialize(), and initialize().

bool sierra::nalu::Realm::is_turbulent ( )

References sierra::nalu::SolutionOptions::isTurbulent_, and solutionOptions_.

Referenced by sierra::nalu::AssembleCourantReynoldsElemAlgorithm::AssembleCourantReynoldsElemAlgorithm(), sierra::nalu::AssembleMomentumEdgeOpenSolverAlgorithm::AssembleMomentumEdgeOpenSolverAlgorithm(), sierra::nalu::AssembleMomentumEdgeSolverAlgorithm::AssembleMomentumEdgeSolverAlgorithm(), sierra::nalu::AssembleMomentumEdgeSymmetrySolverAlgorithm::AssembleMomentumEdgeSymmetrySolverAlgorithm(), sierra::nalu::AssembleMomentumElemOpenSolverAlgorithm::AssembleMomentumElemOpenSolverAlgorithm(), sierra::nalu::AssembleMomentumElemSolverAlgorithm::AssembleMomentumElemSolverAlgorithm(), sierra::nalu::AssembleMomentumElemSymmetrySolverAlgorithm::AssembleMomentumElemSymmetrySolverAlgorithm(), sierra::nalu::EnthalpyViscousWorkNodeSuppAlg::EnthalpyViscousWorkNodeSuppAlg(), sierra::nalu::ActuatorLinePointDrag::execute(), sierra::nalu::MomentumEquationSystem::register_interior_algorithm(), sierra::nalu::MassFractionEquationSystem::register_nodal_fields(), sierra::nalu::MixtureFractionEquationSystem::register_nodal_fields(), sierra::nalu::EnthalpyEquationSystem::register_nodal_fields(), sierra::nalu::MomentumEquationSystem::register_nodal_fields(), sierra::nalu::MomentumEquationSystem::register_non_conformal_bc(), and sierra::nalu::SurfaceForceAndMomentAlgorithm::SurfaceForceAndMomentAlgorithm().

void sierra::nalu::Realm::is_turbulent ( bool isIt )

References sierra::nalu::SolutionOptions::isTurbulent_, isTurbulent_, and solutionOptions_.

void sierra::nalu::Realm::load ( const YAML::Node & node )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References activateAura_, activateMemoryDiagnostic_, autoDecompType_, availableMemoryPerCoreGB_, balanceNodeOptions_, boundaryConditions_, sierra::nalu::OutputInfo::catalystFileName_, sierra::nalu::OutputInfo::catalystParseJson_, check_job(), checkForMissingBcs_, create_mesh(), doBalanceNodes_, doPromotion_, equationSystems_, estimateMemoryOnly_, sierra::nalu::expect_map(), sierra::nalu::get_if_present(), initialConditions_, inputDBName_, sierra::nalu::PostProcessingInfo::load(), sierra::nalu::OutputInfo::load(), sierra::nalu::MaterialPropertys::load(), sierra::nalu::SolutionOptions::load(), sierra::nalu::EquationSystems::load(), sierra::nalu::BoundaryConditions::load(), sierra::nalu::InitialConditions::load(), materialPropertys_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), name_, sierra::nalu::Realm::BalanceNodeOptions::numIters, outputInfo_, postProcessingInfo_, promotionOrder_, provideEntityCount_, realmUsesEdges_, root(), sierra::nalu::NaluEnv::self(), sierra::nalu::OutputInfo::serializedIOGroupSize_, sierra::nalu::Simulation::setSerializedIOGroupSize(), solutionOptions_, solveFrequency_, spatialDimension_, supportInconsistentRestart_, sierra::nalu::Realm::BalanceNodeOptions::target, targetCourant_, timeStepChangeFactor_, and type_.

Referenced by sierra::nalu::Realms::load(), and sierra::nalu::InputOutputRealm::load().

void sierra::nalu::Realm::look_ahead_and_creation ( const YAML::Node & node )

References ablForcingAlg_, sierra::nalu::ActLineFAST, sierra::nalu::ActLinePointDrag, actuator_, sierra::nalu::ActuatorTypeMap, dataProbePostProcessing_, sierra::nalu::NaluParsingHelper::find_nodes_given_key(), solutionNormPostProcessing_, and turbulenceAveragingPostProcessing_.

Referenced by Realm().

void sierra::nalu::Realm::makeSureNodesHaveValidTopology ( )

References bulkData_.

Referenced by pre_timestep_work().

void sierra::nalu::Realm::mesh_velocity_cross_product	(	double *	o,
		double *	c,
		double *	u
	)

Referenced by set_mesh_velocity().

stk::mesh::MetaData & sierra::nalu::Realm::meta_data ( )

References metaData_.

std::string sierra::nalu::Realm::name ( )

References name_.

Referenced by physics_part_name(), sierra::nalu::InputOutputRealm::populate_external_variables_from_input(), populate_restart(), populate_variables_from_input(), and setup_bc().

bool sierra::nalu::Realm::needs_enthalpy ( )

References needsEnthalpy_.

Referenced by sierra::nalu::EnthalpyEquationSystem::EnthalpyEquationSystem().

void sierra::nalu::Realm::needs_enthalpy ( bool needsEnthalpy )

References needsEnthalpy_.

int sierra::nalu::Realm::number_of_states ( )

References sierra::nalu::TimeIntegrator::secondOrderTimeAccurate_, and timeIntegrator_.

void sierra::nalu::Realm::output_banner ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References hasFluids_, maxCourant_, maxReynolds_, sierra::nalu::NaluEnv::naluOutputP0(), name_, and sierra::nalu::NaluEnv::self().

void sierra::nalu::Realm::output_converged_results ( )

References provide_output(), and provide_restart_output().

void sierra::nalu::Realm::overset_orphan_node_field_update	(	stk::mesh::FieldBase *	theField,
		const unsigned	sizeRow,
		const unsigned	sizeCol
	)

References sierra::nalu::OversetManager::overset_orphan_node_field_update(), and oversetManager_.

Referenced by sierra::nalu::AssembleNodalGradUAlgorithmDriver::post_work(), and sierra::nalu::AssembleNodalGradAlgorithmDriver::post_work().

Realms * sierra::nalu::Realm::parent ( ) const

References realms_.

Referenced by root().

Realms * sierra::nalu::Realm::parent ( )

References realms_.

void sierra::nalu::Realm::periodic_delta_solution_update	(	stk::mesh::FieldBase *	theField,
		const unsigned &	sizeOfField
	)		const

References sierra::nalu::PeriodicManager::apply_constraints(), and periodicManager_.

Referenced by sierra::nalu::EquationSystem::assemble_and_solve().

void sierra::nalu::Realm::periodic_field_update	(	stk::mesh::FieldBase *	theField,
		const unsigned &	sizeOfTheField,
		const bool &	bypassFieldCheck = `true`
	)		const

References sierra::nalu::PeriodicManager::apply_constraints(), and periodicManager_.

Referenced by sierra::nalu::RadiativeTransportEquationSystem::assemble_boundary_area(), sierra::nalu::SpecificDissipationRateEquationSystem::compute_wall_model_parameters(), sierra::nalu::ComputeSSTMaxLengthScaleElemAlgorithm::execute(), sierra::nalu::RadiativeTransportEquationSystem::normalize_irradiation(), sierra::nalu::ComputeTurbKineticEnergyWallFunctionAlgorithm::normalize_nodal_fields(), sierra::nalu::ComputeWallFrictionVelocityAlgorithm::normalize_nodal_fields(), sierra::nalu::ComputeABLWallFrictionVelocityAlgorithm::normalize_nodal_fields(), sierra::nalu::SurfaceForceAndMomentAlgorithmDriver::parallel_assemble_area(), sierra::nalu::SurfaceForceAndMomentAlgorithmDriver::parallel_assemble_fields(), sierra::nalu::ComputeGeometryAlgorithmDriver::post_work(), sierra::nalu::AssembleWallHeatTransferAlgorithmDriver::post_work(), sierra::nalu::AssembleNodalGradUAlgorithmDriver::post_work(), and sierra::nalu::AssembleNodalGradAlgorithmDriver::post_work().

void sierra::nalu::Realm::periodic_max_field_update	(	stk::mesh::FieldBase *	theField,
		const unsigned &	sizeOfField
	)		const

References sierra::nalu::PeriodicManager::apply_max_field(), and periodicManager_.

std::string sierra::nalu::Realm::physics_part_name ( std::string name ) const

References doPromotion_, name(), and sierra::nalu::super_element_part_name().

Referenced by sierra::nalu::TurbulenceAveragingPostProcessing::setup(), setup_bc(), and setup_initial_conditions().

void sierra::nalu::Realm::populate_boundary_data ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References bcDataAlg_, equationSystems_, and sierra::nalu::EquationSystems::populate_boundary_data().

Referenced by initialize().

void sierra::nalu::Realm::populate_derived_quantities ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References equationSystems_, and sierra::nalu::EquationSystems::populate_derived_quantities().

virtual void sierra::nalu::Realm::populate_external_variables_from_input ( const double currentTime )

inlinevirtual

Reimplemented in sierra::nalu::InputOutputRealm.

void sierra::nalu::Realm::populate_initial_condition ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References initCondAlg_.

double sierra::nalu::Realm::populate_restart	(	double &	timeStepNm1,
		int &	timeStepCount
	)

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References sierra::nalu::TurbulenceAveragingPostProcessing::currentTimeFilter_, get_current_time(), ioBroker_, sierra::nalu::NaluEnv::naluOutputP0(), name(), outputInfo_, restarted_simulation(), sierra::nalu::OutputInfo::restartTime_, sierra::nalu::NaluEnv::self(), supportInconsistentRestart_, and turbulenceAveragingPostProcessing_.

double sierra::nalu::Realm::populate_variables_from_input ( const double currentTime )

virtual

References sierra::nalu::SolutionOptions::inputVarFromFileMap_, sierra::nalu::SolutionOptions::inputVariablesRestorationTime_, ioBroker_, sierra::nalu::NaluEnv::naluOutputP0(), name(), restarted_simulation(), sierra::nalu::NaluEnv::self(), and solutionOptions_.

void sierra::nalu::Realm::post_converged_work ( )

References dataProbePostProcessing_, equationSystems_, sierra::nalu::SolutionNormPostProcessing::execute(), sierra::nalu::TurbulenceAveragingPostProcessing::execute(), sierra::nalu::DataProbePostProcessing::execute(), sierra::nalu::EquationSystems::post_converged_work(), solutionNormPostProcessing_, and turbulenceAveragingPostProcessing_.

void sierra::nalu::Realm::pre_timestep_work ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References sierra::nalu::SolutionOptions::activateAdaptivity_, sierra::nalu::SolutionOptions::activateUniformRefinement_, bulkData_, compute_geometry(), create_edges(), delete_edges(), equationSystems_, errorIndicatorAlgDriver_, sierra::nalu::AlgorithmDriver::execute(), sierra::nalu::SolutionOptions::externalMeshDeformation_, get_physics_target_names(), get_time_step_count(), has_mesh_deformation(), hasNonConformal_, hasOverset_, initialize_non_conformal(), initialize_overset(), makeSureNodesHaveValidTopology(), sierra::nalu::SolutionOptions::maxRefinementLevel_, sierra::nalu::OutputInfo::meshAdapted_, sierra::nalu::SolutionOptions::meshMotion_, metaData_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::naluOutputP0(), numInitialElements_, outputInfo_, sierra::nalu::EquationSystems::post_adapt_work(), sierra::nalu::EquationSystems::pre_timestep_work(), process_adaptivity(), process_mesh_motion(), realmUsesEdges_, sierra::nalu::SolutionOptions::refineAt_, sierra::nalu::EquationSystems::reinitialize_linear_system(), sierra::nalu::Simulation::rootTimer(), sierra::nalu::NaluEnv::self(), set_current_coordinates(), solutionOptions_, timerAdapt_, and sierra::nalu::SolutionOptions::useAdapter_.

void sierra::nalu::Realm::predict_state ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References equationSystems_, and sierra::nalu::EquationSystems::predict_state().

bool sierra::nalu::Realm::primitive_uses_limiter ( const std::string dofname )

References sierra::nalu::SolutionOptions::limiterMap_, and solutionOptions_.

Referenced by sierra::nalu::AssembleMomentumEdgeSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarElemSolverAlgorithm::execute(), sierra::nalu::AssembleScalarEdgeSolverAlgorithm::execute(), and sierra::nalu::AssembleScalarEigenEdgeSolverAlgorithm::execute().

bool sierra::nalu::Realm::process_adaptivity ( )

References sierra::nalu::SolutionOptions::adaptivityFrequency_, get_time_step_count(), and solutionOptions_.

Referenced by sierra::nalu::ShearStressTransportEquationSystem::post_adapt_work(), sierra::nalu::LowMachEquationSystem::post_adapt_work(), sierra::nalu::EnthalpyEquationSystem::post_adapt_work(), and pre_timestep_work().

void sierra::nalu::Realm::process_external_data_transfer ( )

References externalDataTransferVec_, hasExternalDataTransfer_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::self(), and timerTransferExecute_.

void sierra::nalu::Realm::process_initialization_transfer ( )

References hasInitializationTransfer_, initializationTransferVec_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::self(), and timerTransferExecute_.

void sierra::nalu::Realm::process_io_transfer ( )

References get_time_step_count(), hasIoTransfer_, ioTransferVec_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::OutputInfo::outputFreq_, outputInfo_, sierra::nalu::NaluEnv::self(), and timerTransferExecute_.

void sierra::nalu::Realm::process_mesh_motion ( )

References sierra::nalu::MeshMotionInfo::centroid_, compute_centroid_on_parts(), sierra::nalu::MeshMotionInfo::computeCentroid_, sierra::nalu::MeshMotionInfo::computeCentroidCompleted_, sierra::nalu::MeshMotionInfo::meshMotionBlock_, sierra::nalu::SolutionOptions::meshMotionInfoMap_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::MeshMotionInfo::omega_, sierra::nalu::NaluEnv::self(), set_current_coordinates(), set_current_displacement(), set_mesh_velocity(), set_omega(), solutionOptions_, and sierra::nalu::MeshMotionInfo::unitVec_.

Referenced by initial_work(), initialize(), and pre_timestep_work().

void sierra::nalu::Realm::process_multi_physics_transfer ( )

References hasMultiPhysicsTransfer_, multiPhysicsTransferVec_, sierra::nalu::NaluEnv::nalu_time(), sierra::nalu::NaluEnv::self(), and timerTransferExecute_.

void sierra::nalu::Realm::promote_mesh ( )

References basePartVector_, bulkData_, sierra::nalu::promotion::create_boundary_elements(), desc_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::promotion::promote_elements(), restarted_simulation(), sierra::nalu::NaluEnv::self(), and timerPromoteMesh_.

Referenced by initialize().

void sierra::nalu::Realm::provide_entity_count ( )

References bulkData_, sierra::nalu::NaluEnv::naluOutputP0(), and sierra::nalu::NaluEnv::self().

Referenced by initialize().

double sierra::nalu::Realm::provide_mean_norm ( )

References equationSystems_, and sierra::nalu::EquationSystems::provide_mean_system_norm().

void sierra::nalu::Realm::provide_memory_summary ( )

References convert_bytes(), sierra::nalu::NaluEnv::naluOutputP0(), and sierra::nalu::NaluEnv::self().

Referenced by sierra::nalu::EquationSystems::initialize(), sierra::nalu::TpetraLinearSystem::solve(), and sierra::nalu::EquationSystems::solve_and_update().

void sierra::nalu::Realm::push_equation_to_systems ( EquationSystem * eqSystem )

References equationSystems_, and sierra::nalu::EquationSystems::equationSystemVector_.

bool sierra::nalu::Realm::query_for_overset ( )

References boundaryConditions_, hasOverset_, sierra::nalu::OVERSET_BC, sierra::nalu::BoundaryConditions::size(), and sierra::nalu::BoundaryCondition::theBcType_.

Referenced by sierra::nalu::HeatCondEquationSystem::register_element_fields(), and sierra::nalu::LowMachEquationSystem::register_element_fields().

void sierra::nalu::Realm::register_inflow_bc	(	stk::mesh::Part *	part,
		const stk::topology &	theTopo
	)

References sierra::nalu::AlgorithmDriver::algMap_, bcPartVec_, computeGeometryAlgDriver_, sierra::nalu::MasterElementRepo::get_surface_master_element(), sierra::nalu::INFLOW, metaData_, and sierra::nalu::MasterElement::numIntPoints_.

Referenced by sierra::nalu::EquationSystems::register_inflow_bc().

void sierra::nalu::Realm::register_interior_algorithm ( stk::mesh::Part * part )

References sierra::nalu::AlgorithmDriver::algMap_, computeGeometryAlgDriver_, and sierra::nalu::INTERIOR.

Referenced by sierra::nalu::EquationSystems::register_interior_algorithm().

void sierra::nalu::Realm::register_nodal_fields ( stk::mesh::Part * part )

References sierra::nalu::SolutionOptions::externalMeshDeformation_, sierra::nalu::SolutionOptions::meshMotion_, metaData_, and solutionOptions_.

Referenced by sierra::nalu::EquationSystems::register_nodal_fields().

void sierra::nalu::Realm::register_non_conformal_bc	(	stk::mesh::Part *	part,
		const stk::topology &	theTopo
	)

References sierra::nalu::AlgorithmDriver::algMap_, bcPartVec_, computeGeometryAlgDriver_, sierra::nalu::MasterElementRepo::get_surface_master_element(), metaData_, sierra::nalu::NON_CONFORMAL, and sierra::nalu::MasterElement::numIntPoints_.

Referenced by sierra::nalu::EquationSystems::register_non_conformal_bc().

void sierra::nalu::Realm::register_open_bc	(	stk::mesh::Part *	part,
		const stk::topology &	theTopo
	)

References sierra::nalu::AlgorithmDriver::algMap_, bcPartVec_, computeGeometryAlgDriver_, sierra::nalu::MasterElementRepo::get_surface_master_element(), metaData_, sierra::nalu::MasterElement::numIntPoints_, and sierra::nalu::OPEN.

Referenced by sierra::nalu::EquationSystems::register_open_bc().

void sierra::nalu::Realm::register_periodic_bc	(	stk::mesh::Part *	masterMeshPart,
		stk::mesh::Part *	slaveMeshPart,
		const double &	searchTolerance,
		const std::string &	searchMethodName
	)

References sierra::nalu::PeriodicManager::add_periodic_pair(), allPeriodicInteractingParts_, bcPartVec_, hasPeriodic_, and periodicManager_.

Referenced by sierra::nalu::EquationSystems::register_periodic_bc().

void sierra::nalu::Realm::register_symmetry_bc	(	stk::mesh::Part *	part,
		const stk::topology &	theTopo
	)

References sierra::nalu::AlgorithmDriver::algMap_, bcPartVec_, computeGeometryAlgDriver_, sierra::nalu::MasterElementRepo::get_surface_master_element(), metaData_, sierra::nalu::MasterElement::numIntPoints_, and sierra::nalu::SYMMETRY.

Referenced by sierra::nalu::EquationSystems::register_symmetry_bc().

void sierra::nalu::Realm::register_wall_bc	(	stk::mesh::Part *	part,
		const stk::topology &	theTopo
	)

References sierra::nalu::AlgorithmDriver::algMap_, bcPartVec_, computeGeometryAlgDriver_, sierra::nalu::MasterElementRepo::get_surface_master_element(), metaData_, sierra::nalu::MasterElement::numIntPoints_, and sierra::nalu::WALL.

Referenced by sierra::nalu::EquationSystems::register_wall_bc().

bool sierra::nalu::Realm::restarted_simulation ( )

References sierra::nalu::OutputInfo::activateRestart_, and outputInfo_.

Simulation * sierra::nalu::Realm::root ( ) const

References parent(), and sierra::nalu::Realms::root().

Simulation * sierra::nalu::Realm::root ( )

References parent(), and sierra::nalu::Realms::root().

void sierra::nalu::Realm::set_current_coordinates ( stk::mesh::Part * targetPart )

References bulkData_, and metaData_.

Referenced by pre_timestep_work(), and process_mesh_motion().

void sierra::nalu::Realm::set_current_displacement	(	stk::mesh::Part *	targetPart,
		const std::vector< double > &	centroidCoords,
		const std::vector< double > &	unitVec
	)

References bulkData_, get_current_time(), and metaData_.

Referenced by process_mesh_motion().

void sierra::nalu::Realm::set_global_id ( )

References bulkData_, metaData_, and naluGlobalId_.

Referenced by initialize().

void sierra::nalu::Realm::set_mesh_velocity	(	stk::mesh::Part *	targetPart,
		const std::vector< double > &	centroidCoords,
		const std::vector< double > &	unitVec
	)

References bulkData_, mesh_velocity_cross_product(), and metaData_.

Referenced by process_mesh_motion().

void sierra::nalu::Realm::set_omega	(	stk::mesh::Part *	targetPart,
		double	omega
	)

References bulkData_, get_tanh_blending(), and metaData_.

Referenced by process_mesh_motion().

void sierra::nalu::Realm::setup_adaptivity ( )

References sierra::nalu::SolutionOptions::activateUniformRefinement_, adapterSelector_, sierra::nalu::SolutionOptions::maxRefinementLevel_, metaData_, solutionOptions_, sierra::nalu::SolutionOptions::useAdapter_, and sierra::nalu::SolutionOptions::useMarker_.

Referenced by initialize().

void sierra::nalu::Realm::setup_bc ( )

void sierra::nalu::Realm::setup_edge_fields ( )

References equationSystems_, get_physics_target_names(), and sierra::nalu::EquationSystems::register_edge_fields().

Referenced by initialize().

void sierra::nalu::Realm::setup_element_fields ( )

References equationSystems_, get_physics_target_names(), and sierra::nalu::EquationSystems::register_element_fields().

Referenced by initialize().

void sierra::nalu::Realm::setup_element_promotion ( )

References basePartVector_, sierra::nalu::ElementDescription::create(), desc_, sierra::nalu::MasterElementRepo::get_surface_master_element(), sierra::nalu::MasterElementRepo::get_volume_master_element(), materialPropertys_, meta_data(), metaData_, promotionOrder_, restarted_simulation(), sierra::nalu::super_element_part_name(), sierra::nalu::super_subset_part_name(), superPartVector_, superTargetNames_, and sierra::nalu::MaterialPropertys::targetNames_.

Referenced by initialize().

void sierra::nalu::Realm::setup_initial_conditions ( )

References sierra::nalu::CONSTANT_UD, sierra::nalu::ConstantInitialConditionData::data_, equationSystems_, sierra::nalu::ConstantInitialConditionData::fieldNames_, sierra::nalu::FUNCTION_UD, initCondAlg_, initialConditions_, metaData_, sierra::nalu::NaluEnv::naluOutputP0(), physics_part_name(), sierra::nalu::EquationSystems::register_initial_condition_fcn(), sierra::nalu::NaluEnv::self(), sierra::nalu::InitialConditions::size(), sierra::nalu::InitialCondition::targetNames_, sierra::nalu::InitialCondition::theIcType_, sierra::nalu::USER_SUB_UD, and sierra::nalu::UserDataType_END.

Referenced by initialize().

void sierra::nalu::Realm::setup_interior_algorithms ( )

References sierra::nalu::SolutionOptions::activateAdaptivity_, equationSystems_, errorIndicatorAlgDriver_, get_physics_target_names(), sierra::nalu::EquationSystems::register_interior_algorithm(), and solutionOptions_.

Referenced by initialize().

void sierra::nalu::Realm::setup_nodal_fields ( )

References equationSystems_, get_physics_target_names(), metaData_, naluGlobalId_, and sierra::nalu::EquationSystems::register_nodal_fields().

Referenced by initialize().

void sierra::nalu::Realm::setup_non_conformal_bc	(	stk::mesh::PartVector	currentPartVec,
		stk::mesh::PartVector	opposingPartVec,
		const NonConformalBoundaryConditionData &	nonConformalBCData
	)

References allNonConformalInteractingParts_, sierra::nalu::NonConformalUserData::clipIsoParametricCoords_, sierra::nalu::NonConformalUserData::expandBoxPercentage_, hasNonConformal_, sierra::nalu::SolutionOptions::ncAlgCoincidentNodesErrorCheck_, sierra::nalu::SolutionOptions::ncAlgDetailedOutput_, sierra::nalu::NonConformalManager::nonConformalInfoVec_, nonConformalManager_, sierra::nalu::NonConformalUserData::searchMethodName_, sierra::nalu::NonConformalUserData::searchTolerance_, solutionOptions_, sierra::nalu::BoundaryCondition::targetName_, and sierra::nalu::NonConformalBoundaryConditionData::userData_.

Referenced by sierra::nalu::EquationSystems::register_non_conformal_bc().

void sierra::nalu::Realm::setup_overset_bc ( const OversetBoundaryConditionData & oversetBCData )

References hasOverset_, oversetManager_, and sierra::nalu::OversetBoundaryConditionData::userData_.

Referenced by sierra::nalu::EquationSystems::register_overset_bc().

void sierra::nalu::Realm::setup_post_processing_algorithms ( )

References ablForcingAlg_, actuator_, dataProbePostProcessing_, equationSystems_, sierra::nalu::NaluEnv::naluOutputP0(), sierra::nalu::PostProcessingData::outputFileName_, sierra::nalu::PostProcessingData::parameters_, sierra::nalu::PostProcessingData::physics_, postProcessingInfo_, sierra::nalu::PostProcessingInfo::ppDataVec_, sierra::nalu::EquationSystems::register_surface_pp_algorithm(), sierra::nalu::NaluEnv::self(), sierra::nalu::SolutionNormPostProcessing::setup(), sierra::nalu::TurbulenceAveragingPostProcessing::setup(), sierra::nalu::Actuator::setup(), sierra::nalu::DataProbePostProcessing::setup(), sierra::nalu::ABLForcingAlgorithm::setup(), solutionNormPostProcessing_, sierra::nalu::PostProcessingData::targetNames_, turbulenceAveragingPostProcessing_, and sierra::nalu::PostProcessingData::type_.

Referenced by initialize().

void sierra::nalu::Realm::setup_property ( )

Referenced by initialize().

bool sierra::nalu::Realm::support_inconsistent_restart ( )

References supportInconsistentRestart_.

Referenced by sierra::nalu::TurbKineticEnergyEquationSystem::register_nodal_fields(), sierra::nalu::SpecificDissipationRateEquationSystem::register_nodal_fields(), sierra::nalu::MixtureFractionEquationSystem::register_nodal_fields(), sierra::nalu::HeatCondEquationSystem::register_nodal_fields(), sierra::nalu::EnthalpyEquationSystem::register_nodal_fields(), sierra::nalu::LowMachEquationSystem::register_nodal_fields(), and sierra::nalu::MomentumEquationSystem::register_nodal_fields().

void sierra::nalu::Realm::swap_states ( )

virtual

Reimplemented in sierra::nalu::InputOutputRealm.

References bulkData_.

bool sierra::nalu::Realm::using_SGL_quadrature ( ) const

inline

Referenced by sierra::nalu::SteadyThermalContactSrcElemSuppAlg::SteadyThermalContactSrcElemSuppAlg().

Member Data Documentation

ABLForcingAlgorithm* sierra::nalu::Realm::ablForcingAlg_

Referenced by advance_time_step(), get_inactive_selector(), initialize_post_processing_algorithms(), look_ahead_and_creation(), sierra::nalu::EnthalpyEquationSystem::register_interior_algorithm(), sierra::nalu::MomentumEquationSystem::register_interior_algorithm(), setup_post_processing_algorithms(), and ~Realm().

bool sierra::nalu::Realm::activateAura_

Referenced by create_mesh(), get_activate_aura(), and load().

bool sierra::nalu::Realm::activateMemoryDiagnostic_

Referenced by get_activate_memory_diagnostic(), and load().

Teuchos::RCP<stk::mesh::Selector> sierra::nalu::Realm::activePartForIO_

Referenced by create_output_mesh().

Actuator* sierra::nalu::Realm::actuator_

Referenced by advance_time_step(), initialize_post_processing_algorithms(), look_ahead_and_creation(), sierra::nalu::MomentumEquationSystem::register_nodal_fields(), setup_post_processing_algorithms(), and ~Realm().

stk::mesh::Selector sierra::nalu::Realm::adapterSelector_[4]

Referenced by create_edges(), get_buckets(), and setup_adaptivity().

stk::mesh::PartVector sierra::nalu::Realm::allNonConformalInteractingParts_

Referenced by sierra::nalu::TpetraLinearSystem::getDofStatus(), and setup_non_conformal_bc().

stk::mesh::PartVector sierra::nalu::Realm::allPeriodicInteractingParts_

Referenced by sierra::nalu::TpetraLinearSystem::getDofStatus(), and register_periodic_bc().

std::string sierra::nalu::Realm::autoDecompType_

Referenced by create_mesh(), and load().

double sierra::nalu::Realm::availableMemoryPerCoreGB_

Referenced by check_job(), and load().

BalanceNodeOptions sierra::nalu::Realm::balanceNodeOptions_

Referenced by balance_nodes(), and load().

stk::mesh::PartVector sierra::nalu::Realm::basePartVector_

Referenced by promote_mesh(), and setup_element_promotion().

std::vector<AuxFunctionAlgorithm *> sierra::nalu::Realm::bcDataAlg_

Referenced by populate_boundary_data(), and ~Realm().

stk::mesh::PartVector sierra::nalu::Realm::bcPartVec_

Referenced by enforce_bc_on_exposed_faces(), register_inflow_bc(), register_non_conformal_bc(), register_open_bc(), register_periodic_bc(), register_symmetry_bc(), and register_wall_bc().

BoundaryConditions sierra::nalu::Realm::boundaryConditions_

Referenced by load(), query_for_overset(), and setup_bc().

stk::mesh::BulkData* sierra::nalu::Realm::bulkData_

Referenced by bulk_data(), check_job(), compute_centroid_on_parts(), compute_geometry(), compute_l2_scaling(), compute_vrtm(), create_edges(), create_mesh(), create_promoted_output_mesh(), unit_test_utils::NaluTest::create_realm(), delete_edges(), enforce_bc_on_exposed_faces(), get_buckets(), sierra::nalu::TpetraLinearSystem::getDofStatus(), unit_test_utils::HelperObjects::HelperObjects(), unit_test_utils::HelperObjectsNewME::HelperObjectsNewME(), init_current_coordinates(), makeSureNodesHaveValidTopology(), pre_timestep_work(), promote_mesh(), provide_entity_count(), set_current_coordinates(), set_current_displacement(), set_global_id(), set_mesh_velocity(), set_omega(), swap_states(), unit_test_utils::TEST(), unit_test_utils::HelperObjects::~HelperObjects(), unit_test_utils::HelperObjectsNewME::~HelperObjectsNewME(), and ~Realm().

bool sierra::nalu::Realm::checkForMissingBcs_

Referenced by create_mesh(), dump_simulation_time(), initialize(), and load().

ComputeGeometryAlgorithmDriver* sierra::nalu::Realm::computeGeometryAlgDriver_

Referenced by breadboard(), compute_geometry(), register_inflow_bc(), register_interior_algorithm(), register_non_conformal_bc(), register_open_bc(), register_symmetry_bc(), register_wall_bc(), and ~Realm().

int sierra::nalu::Realm::currentNonlinearIteration_

Referenced by advance_time_step(), sierra::nalu::MomentumEquationSystem::compute_projected_nodal_gradient(), sierra::nalu::RadiativeTransportEquationSystem::solve_and_update(), and sierra::nalu::MassFractionEquationSystem::solve_and_update().

DataProbePostProcessing* sierra::nalu::Realm::dataProbePostProcessing_

Referenced by get_inactive_selector(), initialize_post_processing_algorithms(), look_ahead_and_creation(), post_converged_work(), and setup_post_processing_algorithms().

std::unique_ptr<ElementDescription> sierra::nalu::Realm::desc_

Referenced by create_promoted_output_mesh(), promote_mesh(), setup_element_promotion(), and sierra::nalu::SteadyThermalContactSrcElemSuppAlg::SteadyThermalContactSrcElemSuppAlg().

bool sierra::nalu::Realm::doBalanceNodes_

Referenced by initialize(), and load().

bool sierra::nalu::Realm::doPromotion_

Referenced by check_job(), dump_simulation_time(), get_physics_target_names(), initialize(), load(), physics_part_name(), and provide_output().

stk::mesh::Part* sierra::nalu::Realm::edgesPart_

Referenced by create_edges(), create_mesh(), and delete_edges().

stk::mesh::PartVector sierra::nalu::Realm::emptyPartVector_

Referenced by get_slave_part_vector().

EquationSystems sierra::nalu::Realm::equationSystems_

ErrorIndicatorAlgorithmDriver* sierra::nalu::Realm::errorIndicatorAlgDriver_

Referenced by pre_timestep_work(), sierra::nalu::HeatCondEquationSystem::register_interior_algorithm(), sierra::nalu::LowMachEquationSystem::register_interior_algorithm(), setup_interior_algorithms(), and ~Realm().

bool sierra::nalu::Realm::estimateMemoryOnly_

Referenced by check_job(), and load().

stk::mesh::Part* sierra::nalu::Realm::exposedBoundaryPart_

Referenced by create_mesh(), and enforce_bc_on_exposed_faces().

std::vector<Transfer *> sierra::nalu::Realm::externalDataTransferVec_

Referenced by augment_transfer_vector(), and process_external_data_transfer().

stk::util::ParameterList sierra::nalu::Realm::globalParameters_

Referenced by create_restart_mesh(), initialize_global_variables(), and provide_restart_output().

bool sierra::nalu::Realm::hasExternalDataTransfer_

Referenced by augment_transfer_vector(), dump_simulation_time(), and process_external_data_transfer().

bool sierra::nalu::Realm::hasFluids_

Referenced by sierra::nalu::LowMachEquationSystem::LowMachEquationSystem(), and output_banner().

bool sierra::nalu::Realm::hasInitializationTransfer_

Referenced by augment_transfer_vector(), dump_simulation_time(), and process_initialization_transfer().

bool sierra::nalu::Realm::hasIoTransfer_

Referenced by augment_transfer_vector(), dump_simulation_time(), and process_io_transfer().

bool sierra::nalu::Realm::hasMultiPhysicsTransfer_

Referenced by augment_transfer_vector(), dump_simulation_time(), and process_multi_physics_transfer().

bool sierra::nalu::Realm::hasNonConformal_

Referenced by has_non_matching_boundary_face_alg(), initialize(), pre_timestep_work(), and setup_non_conformal_bc().

bool sierra::nalu::Realm::hasOverset_

Referenced by dump_simulation_time(), get_inactive_selector(), has_non_matching_boundary_face_alg(), initialize(), sierra::nalu::AssembleNodalGradUAlgorithmDriver::post_work(), sierra::nalu::AssembleNodalGradAlgorithmDriver::post_work(), pre_timestep_work(), query_for_overset(), and setup_overset_bc().

bool sierra::nalu::Realm::hasPeriodic_

Referenced by sierra::nalu::EquationSystem::assemble_and_solve(), sierra::nalu::RadiativeTransportEquationSystem::assemble_boundary_area(), sierra::nalu::SpecificDissipationRateEquationSystem::compute_wall_model_parameters(), dump_simulation_time(), sierra::nalu::ComputeSSTMaxLengthScaleElemAlgorithm::execute(), get_slave_part_vector(), sierra::nalu::TpetraLinearSystem::getDofStatus(), initialize(), sierra::nalu::RadiativeTransportEquationSystem::normalize_irradiation(), sierra::nalu::ComputeTurbKineticEnergyWallFunctionAlgorithm::normalize_nodal_fields(), sierra::nalu::ComputeWallFrictionVelocityAlgorithm::normalize_nodal_fields(), sierra::nalu::ComputeABLWallFrictionVelocityAlgorithm::normalize_nodal_fields(), sierra::nalu::SurfaceForceAndMomentAlgorithmDriver::parallel_assemble_area(), sierra::nalu::SurfaceForceAndMomentAlgorithmDriver::parallel_assemble_fields(), sierra::nalu::ComputeGeometryAlgorithmDriver::post_work(), sierra::nalu::AssembleNodalGradUAlgorithmDriver::post_work(), sierra::nalu::AssembleWallHeatTransferAlgorithmDriver::post_work(), sierra::nalu::AssembleNodalGradAlgorithmDriver::post_work(), and register_periodic_bc().

HDF5FilePtr* sierra::nalu::Realm::HDF5ptr_

Referenced by setup_property(), and ~Realm().

std::vector<Algorithm *> sierra::nalu::Realm::initCondAlg_

InitialConditions sierra::nalu::Realm::initialConditions_

Referenced by load(), and setup_initial_conditions().

std::vector<Transfer *> sierra::nalu::Realm::initializationTransferVec_

Referenced by augment_transfer_vector(), and process_initialization_transfer().

std::string sierra::nalu::Realm::inputDBName_

Referenced by create_mesh(), and load().

size_t sierra::nalu::Realm::inputMeshIdx_

Referenced by create_mesh(), and input_variables_from_mesh().

stk::io::StkMeshIoBroker* sierra::nalu::Realm::ioBroker_

Referenced by check_job(), create_mesh(), create_output_mesh(), create_restart_mesh(), sierra::nalu::InputOutputRealm::initialize(), initialize(), input_variables_from_mesh(), sierra::nalu::InputOutputRealm::populate_external_variables_from_input(), populate_restart(), populate_variables_from_input(), provide_output(), provide_restart_output(), and ~Realm().

std::vector<Transfer *> sierra::nalu::Realm::ioTransferVec_

Referenced by augment_transfer_vector(), and process_io_transfer().

bool sierra::nalu::Realm::isothermalFlow_

Referenced by sierra::nalu::EnthalpyEquationSystem::EnthalpyEquationSystem(), and setup_property().

bool sierra::nalu::Realm::isTurbulent_

Referenced by is_turbulent().

double sierra::nalu::Realm::l2Scaling_

Referenced by sierra::nalu::RadiativeTransportEquationSystem::compute_div_norm(), compute_l2_scaling(), and sierra::nalu::TpetraLinearSystem::solve().

MaterialPropertys sierra::nalu::Realm::materialPropertys_

Referenced by sierra::nalu::EnthalpyEquationSystem::extract_temperature(), extract_universal_constant(), get_material_prop_eval(), get_physics_target_names(), load(), setup_element_promotion(), and setup_property().

double sierra::nalu::Realm::maxCourant_

Referenced by compute_adaptive_time_step(), sierra::nalu::AssembleCourantReynoldsElemAlgorithm::execute(), and output_banner().

double sierra::nalu::Realm::maxReynolds_

Referenced by sierra::nalu::AssembleCourantReynoldsElemAlgorithm::execute(), and output_banner().

stk::mesh::MetaData* sierra::nalu::Realm::metaData_

Referenced by check_job(), commit(), compute_centroid_on_parts(), compute_geometry(), compute_l2_scaling(), compute_vrtm(), create_edges(), create_mesh(), create_output_mesh(), create_promoted_output_mesh(), unit_test_utils::NaluTest::create_realm(), create_restart_mesh(), delete_edges(), enforce_bc_on_exposed_faces(), get_buckets(), unit_test_utils::HelperObjects::HelperObjects(), unit_test_utils::HelperObjectsNewME::HelperObjectsNewME(), init_current_coordinates(), input_variables_from_mesh(), load(), meta_data(), pre_timestep_work(), process_mesh_motion(), promote_mesh(), register_inflow_bc(), sierra::nalu::InputOutputRealm::register_io_fields(), register_nodal_fields(), register_non_conformal_bc(), register_open_bc(), register_symmetry_bc(), register_wall_bc(), set_current_coordinates(), set_current_displacement(), set_global_id(), set_mesh_velocity(), set_omega(), setup_adaptivity(), setup_element_promotion(), setup_initial_conditions(), setup_nodal_fields(), setup_property(), unit_test_utils::TEST(), unit_test_utils::HelperObjects::~HelperObjects(), unit_test_utils::HelperObjectsNewME::~HelperObjectsNewME(), and ~Realm().

std::vector<Transfer *> sierra::nalu::Realm::multiPhysicsTransferVec_

Referenced by augment_transfer_vector(), and process_multi_physics_transfer().

GlobalIdFieldType* sierra::nalu::Realm::naluGlobalId_

std::string sierra::nalu::Realm::name_

Referenced by advance_time_step(), sierra::nalu::Transfer::breadboard(), sierra::nalu::PeriodicManager::build_constraints(), check_job(), create_edges(), dump_simulation_time(), load(), name(), sierra::nalu::Realms::IsString::operator()(), output_banner(), provide_output(), and provide_restart_output().

bool sierra::nalu::Realm::needsEnthalpy_

Referenced by needs_enthalpy(), and setup_property().

const YAML::Node& sierra::nalu::Realm::node_

Referenced by sierra::nalu::ComputeMdotAlgorithmDriver::ComputeMdotAlgorithmDriver().

SizeType sierra::nalu::Realm::nodeCount_

Referenced by check_job().

NonConformalManager* sierra::nalu::Realm::nonConformalManager_

Referenced by sierra::nalu::TpetraLinearSystem::buildNonConformalNodeGraph(), sierra::nalu::NonConformalInfo::determine_elems_to_ghost(), sierra::nalu::ComputeMdotNonConformalAlgorithm::execute(), sierra::nalu::AssembleNodalGradNonConformalAlgorithm::execute(), sierra::nalu::AssembleNodalGradUNonConformalAlgorithm::execute(), sierra::nalu::AssemblePNGNonConformalSolverAlgorithm::execute(), sierra::nalu::AssembleScalarDiffNonConformalSolverAlgorithm::execute(), sierra::nalu::AssembleScalarNonConformalSolverAlgorithm::execute(), sierra::nalu::AssembleMomentumNonConformalSolverAlgorithm::execute(), sierra::nalu::AssembleContinuityNonConformalSolverAlgorithm::execute(), initialize_non_conformal(), setup_non_conformal_bc(), and ~Realm().

unsigned sierra::nalu::Realm::numInitialElements_

Referenced by sierra::nalu::ErrorIndicatorAlgorithmDriver::post_work(), and pre_timestep_work().

OutputInfo* sierra::nalu::Realm::outputInfo_

Referenced by augment_output_variable_list(), augment_restart_variable_list(), create_output_mesh(), create_promoted_output_mesh(), create_restart_mesh(), load(), populate_restart(), pre_timestep_work(), process_io_transfer(), provide_output(), provide_restart_output(), restarted_simulation(), and ~Realm().

OversetManager* sierra::nalu::Realm::oversetManager_

Referenced by sierra::nalu::TpetraLinearSystem::buildOversetNodeGraph(), sierra::nalu::AssembleOversetSolverConstraintAlgorithm::execute(), get_inactive_selector(), initialize_overset(), sierra::nalu::OversetManager::overset_orphan_node_field_update(), overset_orphan_node_field_update(), sierra::nalu::UpdateOversetFringeAlgorithmDriver::pre_work(), sierra::nalu::TpetraLinearSystem::prepareConstraints(), and setup_overset_bc().

PeriodicManager* sierra::nalu::Realm::periodicManager_

Referenced by dump_simulation_time(), get_slave_part_vector(), initialize(), periodic_delta_solution_update(), periodic_field_update(), periodic_max_field_update(), register_periodic_bc(), and ~Realm().

PostProcessingInfo* sierra::nalu::Realm::postProcessingInfo_

Referenced by load(), setup_post_processing_algorithms(), and ~Realm().

std::unique_ptr<PromotedElementIO> sierra::nalu::Realm::promotionIO_

Referenced by create_promoted_output_mesh(), and provide_output().

unsigned sierra::nalu::Realm::promotionOrder_

Referenced by check_job(), load(), and setup_element_promotion().

std::vector<Algorithm *> sierra::nalu::Realm::propertyAlg_

Referenced by evaluate_properties(), setup_property(), and ~Realm().

std::map<PropertyIdentifier, ScalarFieldType *> sierra::nalu::Realm::propertyMap_

Referenced by augment_property_map(), and setup_property().

bool sierra::nalu::Realm::provideEntityCount_

Referenced by initialize(), and load().

Realms& sierra::nalu::Realm::realms_

Referenced by parent().

bool sierra::nalu::Realm::realmUsesEdges_

size_t sierra::nalu::Realm::restartFileIndex_

Referenced by create_restart_mesh(), and provide_restart_output().

size_t sierra::nalu::Realm::resultsFileIndex_

Referenced by create_output_mesh(), and provide_output().

SolutionNormPostProcessing* sierra::nalu::Realm::solutionNormPostProcessing_

Referenced by look_ahead_and_creation(), post_converged_work(), setup_post_processing_algorithms(), and ~Realm().

SolutionOptions* sierra::nalu::Realm::solutionOptions_

int sierra::nalu::Realm::solveFrequency_

Referenced by advance_time_step(), and load().

unsigned sierra::nalu::Realm::spatialDimension_

Referenced by sierra::nalu::build_topo_kernel_if_requested(), check_job(), sierra::nalu::TurbulenceAveragingPostProcessing::compute_favre_stress(), sierra::nalu::TurbulenceAveragingPostProcessing::compute_lambda_ci(), sierra::nalu::TurbulenceAveragingPostProcessing::compute_q_criterion(), sierra::nalu::TurbulenceAveragingPostProcessing::compute_reynolds_stress(), sierra::nalu::TurbulenceAveragingPostProcessing::compute_tke(), sierra::nalu::TurbulenceAveragingPostProcessing::compute_vorticity(), sierra::nalu::ABLForcingAlgorithm::eval_momentum_source(), load(), sierra::nalu::ABLForcingAlgorithm::load_momentum_info(), sierra::nalu::MeshDisplacementEquationSystem::MeshDisplacementEquationSystem(), sierra::nalu::MomentumEquationSystem::MomentumEquationSystem(), sierra::nalu::ProjectedNodalGradientEquationSystem::ProjectedNodalGradientEquationSystem(), sierra::nalu::MeshDisplacementEquationSystem::reinitialize_linear_system(), sierra::nalu::ProjectedNodalGradientEquationSystem::reinitialize_linear_system(), sierra::nalu::MomentumEquationSystem::reinitialize_linear_system(), and sierra::nalu::TurbulenceAveragingPostProcessing::setup().

stk::mesh::PartVector sierra::nalu::Realm::superPartVector_

Referenced by setup_element_promotion().

std::vector<std::string> sierra::nalu::Realm::superTargetNames_

Referenced by get_physics_target_names(), and setup_element_promotion().

bool sierra::nalu::Realm::supportInconsistentRestart_

Referenced by load(), populate_restart(), and support_inconsistent_restart().

double sierra::nalu::Realm::targetCourant_

Referenced by compute_adaptive_time_step(), and load().

TimeIntegrator* sierra::nalu::Realm::timeIntegrator_

double sierra::nalu::Realm::timerAdapt_

Referenced by dump_simulation_time(), sierra::nalu::EquationSystems::post_adapt_work(), and pre_timestep_work().

double sierra::nalu::Realm::timerCreateEdges_

Referenced by create_edges(), and dump_simulation_time().

double sierra::nalu::Realm::timerCreateMesh_

Referenced by create_mesh(), create_output_mesh(), and dump_simulation_time().

double sierra::nalu::Realm::timerInitializeEqs_

Referenced by dump_simulation_time(), sierra::nalu::EquationSystems::initialize(), and sierra::nalu::EquationSystems::reinitialize_linear_system().

double sierra::nalu::Realm::timerNonconformal_

Referenced by dump_simulation_time(), sierra::nalu::NonConformalManager::initialize(), and sierra::nalu::OversetManager::initialize().

double sierra::nalu::Realm::timerOutputFields_

Referenced by dump_simulation_time(), provide_output(), and provide_restart_output().

double sierra::nalu::Realm::timerPopulateFieldData_

Referenced by dump_simulation_time(), and initialize().

double sierra::nalu::Realm::timerPopulateMesh_

Referenced by dump_simulation_time(), and initialize().

double sierra::nalu::Realm::timerPromoteMesh_

Referenced by dump_simulation_time(), and promote_mesh().

double sierra::nalu::Realm::timerPropertyEval_

Referenced by dump_simulation_time(), and evaluate_properties().

double sierra::nalu::Realm::timerSkinMesh_

Referenced by dump_simulation_time(), enforce_bc_on_exposed_faces(), and sierra::nalu::OversetManager::skin_exposed_surface_on_inactive_part().

double sierra::nalu::Realm::timerTransferExecute_

Referenced by dump_simulation_time(), process_external_data_transfer(), process_initialization_transfer(), process_io_transfer(), and process_multi_physics_transfer().

double sierra::nalu::Realm::timerTransferSearch_

Referenced by dump_simulation_time(), and sierra::nalu::Transfer::initialize_begin().

double sierra::nalu::Realm::timeStepChangeFactor_

Referenced by compute_adaptive_time_step(), and load().

TurbulenceAveragingPostProcessing* sierra::nalu::Realm::turbulenceAveragingPostProcessing_

Referenced by initialize_global_variables(), look_ahead_and_creation(), populate_restart(), post_converged_work(), provide_restart_output(), setup_post_processing_algorithms(), and ~Realm().

std::string sierra::nalu::Realm::type_

Referenced by load(), and sierra::nalu::InputOutputRealm::populate_external_variables_from_input().

bool sierra::nalu::Realm::uniformFlow_

Referenced by sierra::nalu::MassFractionEquationSystem::MassFractionEquationSystem(), sierra::nalu::MixtureFractionEquationSystem::MixtureFractionEquationSystem(), and setup_property().

double sierra::nalu::Realm::wallTimeStart_

Referenced by provide_output(), and provide_restart_output().

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Public Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation